Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_H23
(574 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 2.0
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 27 2.0
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 6.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 6.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 6.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 6.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 6.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 6.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 6.0
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 25 6.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 6.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 7.9
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 7.9
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 7.9
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 160 MLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLD 273
M+ +D EP +S C LL + D + MVS E +
Sbjct: 1281 MVESDYEPDVSLCPELLSLAIDFPGDPFVMVSKMEKYE 1318
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 27.1 bits (57), Expect = 2.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 403 PIKDCTSVDLQCRHHLPLSR 344
P K+C + L+C +H+P SR
Sbjct: 46 PCKNCKAGKLECTYHMPSSR 65
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.0
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 86 QHHLVAKQSPLLLYSRAISENLKHV 160
+ H+V +L++S++ SE++KHV
Sbjct: 558 ESHVVCYMDDILIHSKSESEHVKHV 582
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.0
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 86 QHHLVAKQSPLLLYSRAISENLKHV 160
+ H+V +L++S++ SE++KHV
Sbjct: 558 ESHVVCYMDDILIHSKSESEHVKHV 582
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.0
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 86 QHHLVAKQSPLLLYSRAISENLKHV 160
+ H+V +L++S++ SE++KHV
Sbjct: 558 ESHVVCYMDDILIHSKSESEHVKHV 582
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.0
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 86 QHHLVAKQSPLLLYSRAISENLKHV 160
+ H+V +L++S++ SE++KHV
Sbjct: 558 ESHVVCYMDDILIHSKSESEHVKHV 582
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.0
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 86 QHHLVAKQSPLLLYSRAISENLKHV 160
+ H+V +L++S++ SE++KHV
Sbjct: 558 ESHVVCYMDDILIHSKSESEHVKHV 582
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.0
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 86 QHHLVAKQSPLLLYSRAISENLKHV 160
+ H+V +L++S++ SE++KHV
Sbjct: 558 ESHVVCYMDDILIHSKSESEHVKHV 582
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.0
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 86 QHHLVAKQSPLLLYSRAISENLKHV 160
+ H+V +L++S++ SE++KHV
Sbjct: 558 ESHVVCYMDDILIHSKSESEHVKHV 582
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 25.4 bits (53), Expect = 6.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 412 QARTAFTNSALLLAEQYGFDGIDLSWQLPK 501
Q T F S+L +A G+D I L W L K
Sbjct: 531 QGVTEFVPSSLGVALAKGYDEIGLEWSLTK 560
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.0
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 86 QHHLVAKQSPLLLYSRAISENLKHV 160
+ H+V +L++S++ SE++KHV
Sbjct: 558 ESHVVCYMDDILIHSKSESEHVKHV 582
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.9
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 86 QHHLVAKQSPLLLYSRAISENLKHV 160
+ H+V +L++S++ SE++KHV
Sbjct: 558 ESHVVCYMDNILIHSKSESEHVKHV 582
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.9
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 86 QHHLVAKQSPLLLYSRAISENLKHV 160
+ H+V +L++S++ SE++KHV
Sbjct: 558 ESHVVCYMDNILIHSKSESEHVKHV 582
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.9
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 86 QHHLVAKQSPLLLYSRAISENLKHV 160
+ H+V +L++S++ SE++KHV
Sbjct: 558 ESHVVCYMDNILIHSKSESEHVKHV 582
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,463
Number of Sequences: 5004
Number of extensions: 43326
Number of successful extensions: 142
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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