Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_H22
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    27   1.3  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    26   3.1  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    26   4.1  
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    25   9.5  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    25   9.5  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    25   9.5  

>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -2

Query: 440 PGDPDINYLEIYSPTKTEMKSSSDFGKRSFWDNLGLVENENYSNYVKDE 294
           P  P  ++ E Y+P +  +K SSDF K+  + +L +V    YSN +K++
Sbjct: 285 PKLPPPSHEESYNPPEEYLKQSSDFPKK--YKSLRVV--PAYSNLIKEK 329


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 408 YLQVVDIRIAWLHRQPFHTRAGHFRYP 488
           Y  + D+ I W  R PFH    H R+P
Sbjct: 301 YTFLWDVFIDWRIRFPFHKSINHKRFP 327


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 426 YQLPGDIFPNKNRDEIKLRFR 364
           + L  ++FP +NR +IKL+F+
Sbjct: 387 FALIANMFPTRNRRQIKLKFK 407


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 332 LVQGYPRKIFYRNLSLISSLFLLGNISPGS*Y 427
           +++  P KI       IS +  LGN+ PG  Y
Sbjct: 164 MIEHDPYKILDLTAECISLMLTLGNVKPGGRY 195


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 491 TGIPKVPGSSVKWLPVKP 438
           TG+ ++P +S  W P KP
Sbjct: 246 TGLSRIPVTSCAWNPAKP 263


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 381 FHLCFCWGIYLQVVDIRIAWLHRQPFH 461
           F+L F   ++L   D  I W+HR   H
Sbjct: 149 FYLFFSIALFLLFSDFLIYWIHRALHH 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,801
Number of Sequences: 5004
Number of extensions: 32255
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)