Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_H22
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0453 + 3512645-3514246                                           28   4.1  
12_02_1081 + 25914180-25914371,25918121-25919104                       28   5.5  
08_02_0903 + 22438406-22438614,22439640-22440366,22440494-224406...    27   7.2  

>11_01_0453 + 3512645-3514246
          Length = 533

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 391 VFVGEYISR*LISGSPGFTGSHFTLEPGTFGIP 489
           + VG+ I R +I+GS    G + T    TFG P
Sbjct: 241 MLVGDGIGRTVITGSRSVRGGYTTFSSATFGTP 273


>12_02_1081 + 25914180-25914371,25918121-25919104
          Length = 391

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +3

Query: 444 HRQPFHTRAGHFR 482
           HRQPFH  AGH R
Sbjct: 189 HRQPFHVEAGHRR 201


>08_02_0903 +
           22438406-22438614,22439640-22440366,22440494-22440679,
           22441310-22441770,22441869-22442027,22442098-22442449,
           22442563-22442842,22443330-22443661
          Length = 901

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 396 CWGIYLQVVDIRIAWLHRQPFHTRAGHFRYPGGG 497
           C GI+   V IR   +H Q  +  A H+RY  GG
Sbjct: 591 CEGIHPFEVQIRTKEMHLQAEYGFAAHWRYKEGG 624


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,564,237
Number of Sequences: 37544
Number of extensions: 182092
Number of successful extensions: 465
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)