Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_H22
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M96145-1|AAA28057.1|  562|Caenorhabditis elegans elastase protein.     39   0.002
AF016680-3|AAB66165.2|  562|Caenorhabditis elegans Abnormal gut ...    39   0.002
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    28   4.9  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    28   4.9  

>M96145-1|AAA28057.1|  562|Caenorhabditis elegans elastase protein.
          Length = 562

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 20/42 (47%), Positives = 27/42 (64%)
 Frame = -2

Query: 527 DSLIGMVYSFASTGIPKVPGSSVKWLPVKPGDPDINYLEIYS 402
           + LI MV SFA TG+P++    V+W PV   D D+N+L I S
Sbjct: 480 NDLIDMVISFAKTGVPQI--EDVEWRPVSDPD-DVNFLNIRS 518


>AF016680-3|AAB66165.2|  562|Caenorhabditis elegans Abnormal gut
           esterase protein 1 protein.
          Length = 562

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 20/42 (47%), Positives = 27/42 (64%)
 Frame = -2

Query: 527 DSLIGMVYSFASTGIPKVPGSSVKWLPVKPGDPDINYLEIYS 402
           + LI MV SFA TG+P++    V+W PV   D D+N+L I S
Sbjct: 480 NDLIDMVISFAKTGVPQI--EDVEWRPVSDPD-DVNFLNIRS 518


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 485  IPKVPGSSVKWLPVKPGDPDINYLEI--YSPTKTEMKSS 375
            +PK P   V   PV+P D +I+ +E+   SP+ TE   S
Sbjct: 4482 LPKSPERQVLVNPVEPSDSEISEIELEYTSPSPTEKSES 4520


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 485  IPKVPGSSVKWLPVKPGDPDINYLEI--YSPTKTEMKSS 375
            +PK P   V   PV+P D +I+ +E+   SP+ TE   S
Sbjct: 4482 LPKSPERQVLVNPVEPSDSEISEIELEYTSPSPTEKSES 4520


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,739,247
Number of Sequences: 27780
Number of extensions: 179054
Number of successful extensions: 504
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)