Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_H22
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    64   1e-12
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           64   1e-12
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.0  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   3.5  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   4.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   4.6  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   8.1  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 63.7 bits (148), Expect = 1e-12
 Identities = 31/84 (36%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
 Frame = -2

Query: 539 VKMTDSLIGMVYSFASTGIPKVPGSSVKWLPVKPGDPDINYLEIYSPTKTEMKSSSDFGK 360
           +KM   LI    SF + G+P V  +SV+W  + P +  ++YL I  P K +M SS++FG+
Sbjct: 486 IKMQKVLIDFWVSFVNNGVPNV--NSVQWPRLNPNEKSLHYLHIAGPGKIQMDSSTNFGR 543

Query: 359 RSFWDNLGLVENE-NYSNYVKDEL 291
             FW+++   EN+ + S+ +K+EL
Sbjct: 544 EDFWNSINFNENKLHTSDTLKEEL 567


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 63.7 bits (148), Expect = 1e-12
 Identities = 31/84 (36%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
 Frame = -2

Query: 539 VKMTDSLIGMVYSFASTGIPKVPGSSVKWLPVKPGDPDINYLEIYSPTKTEMKSSSDFGK 360
           +KM   LI    SF + G+P V  +SV+W  + P +  ++YL I  P K +M SS++FG+
Sbjct: 486 IKMQKVLIDFWVSFVNNGVPNV--NSVQWPRLNPNEKSLHYLHIAGPGKIQMDSSTNFGR 543

Query: 359 RSFWDNLGLVENE-NYSNYVKDEL 291
             FW+++   EN+ + S+ +K+EL
Sbjct: 544 EDFWNSINFNENKLHTSDTLKEEL 567


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -2

Query: 410 IYSPTKTEMKSSSDFGKRSFWDNLGLVENENYSNYVK 300
           I S +   + +++++   ++ +N     N NY+NY K
Sbjct: 315 ISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNNYKK 351


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 386 MKSSSDFGKRSFWDNLGLVENENYSNYVK 300
           + S S+  K S ++N     N NY+NY K
Sbjct: 315 ISSLSNNYKYSNYNNYNNYNNNNYNNYNK 343



 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = +2

Query: 275 LGIKFKAHLLHNYYSFHFRLVQGYPRKIFYRN 370
           L   +K    +NY +++      Y +K++Y+N
Sbjct: 318 LSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKN 349


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +2

Query: 284 KFKAHLLHNYYSFHFRLVQGYPRKIFYRN 370
           K  + L +NY   ++     Y +K++Y+N
Sbjct: 80  KIISSLSNNYKYSNYNNYNNYNKKLYYKN 108


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 308 NYYSFHFRLVQGYPR 352
           N+  FH +LV+ +PR
Sbjct: 138 NHLPFHEKLVESFPR 152


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 389 EMKSSSDFGKRSFWDNLGLVENENYSNYVKDEL*ILYLDHV 267
           E K  S    ++  +N     N NY+NY K    I Y++ V
Sbjct: 78  EPKIISSLSNKTIHNNNNY-NNNNYNNYKKLYYNINYIEQV 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,918
Number of Sequences: 438
Number of extensions: 2510
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)