Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_H20
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    27   1.5  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    26   2.0  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    26   2.0  
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   3.6  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   4.7  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    24   8.2  

>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
 Frame = -1

Query: 314 GCIHHNFEILSKRTSLHGVVPKAGMVYSDL--LNDKLWQRLFQNHLQNMRSSLE*AQNHE 141
           G IH  ++ L+     HG     G    D+  L+   W R+   H+   R  +   +N E
Sbjct: 430 GSIHPEYD-LNAVVYHHGTSASGGHYTVDVQQLDKSGWFRIDDTHIH--RVPIHDVENSE 486

Query: 140 -TEHHFLLDLVHKDQAAYMLFHSHQ 69
            +    L  L H D+ AY+LF++ +
Sbjct: 487 LSADPSLSKLGHGDRVAYLLFYTRR 511


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +2

Query: 92  KLLDLYAQGLTRNDVQFHDFEPILRKTAYFEGGFEKAAAIAYHLID 229
           K  D     L  +++ FHD+EP +    Y  G    A+   Y + D
Sbjct: 202 KKSDTLDMDLESHNMTFHDYEPSIENKNYDFGSSHSASMQMYEMDD 247


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 83  ITYKLLDLYAQGLTRNDVQFHDFEPILRKTAYFEGGFEKAAAI 211
           + +  + L  +G+T +   FH   P++R     +GGF  AA +
Sbjct: 417 LIFDAICLLEKGITYSQHNFHLKLPLIRLYLLLDGGFPAAAKV 459


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 32  DYRDSIFIFVSNIGGYEITYKLLDLYAQGLTRNDVQFHDFEPILRKTAYFE 184
           D+++ I I   N    EIT +   L A+    N++  +D EP +    Y E
Sbjct: 96  DFQNEIGIIEENAVEQEITLQQQQLLAEKDEENEIADNDLEPEVYDILYEE 146


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +3

Query: 231  TIYHSCLWNNTM 266
            ++ HSCLWN+T+
Sbjct: 1829 SLLHSCLWNDTL 1840


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +2

Query: 11  HHSVDGVDYRDSIFIFVSNIGGYEITYKLLDLYAQGLTRNDV 136
           H S +  D+  ++   ++++  Y    KLL+LY QG+   ++
Sbjct: 252 HLSNESSDFFKNVKNVLTDVETYHEFLKLLNLYVQGIIDRNI 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,666,887
Number of Sequences: 5004
Number of extensions: 32412
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)