Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_H20
         (416 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0622 + 4996584-4996800,4996975-4997060,4997112-4997492,499...    29   2.0  
05_07_0088 - 27612680-27612781,27612887-27612977,27613128-276131...    29   2.0  
11_06_0720 - 26617665-26617781,26617851-26617924,26618218-266183...    28   3.5  
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833...    27   6.0  
03_02_0466 - 8690469-8690522,8691008-8691113,8691216-8691457,869...    27   6.0  
03_02_0463 - 8673313-8673639,8674040-8674126,8674710-8674790,867...    27   6.0  
01_05_0680 - 24238840-24241242                                         27   8.0  

>11_01_0622 +
           4996584-4996800,4996975-4997060,4997112-4997492,
           4997585-4997605
          Length = 234

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 158 ILRKTAYFEGGFEKAAAIAYHLIDHYIPFLPLEQHHVEMCAL-REFRNYGEYNP 316
           I + TA  EGG E   A+   ++ H + FLP +Q  V  C L R +R+  +  P
Sbjct: 14  IKKTTADVEGGGEWINALPEEVLQHVMSFLPAKQ-AVRTCVLARRWRHLWKSMP 66


>05_07_0088 -
           27612680-27612781,27612887-27612977,27613128-27613198,
           27613978-27614196
          Length = 160

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
 Frame = +2

Query: 98  LDLYAQGLTRN-DVQFHDFE---PILRKTAYFEGGFEKAAAIAYHLIDHYIPFLPLEQHH 265
           L+L A G +R+ D+++ +F+   PI+R     E  +  AA  ++   DH +P    E   
Sbjct: 71  LNLMAYGGSRSGDIRYGEFQSTSPIIRSPPNHEAIYGAAAHYSHPSSDHTLPLFEPE--- 127

Query: 266 VEMCALREFRNYGEYNPTDEML 331
            E   LR  R+YG   P D  +
Sbjct: 128 -ESIYLR--RHYGLNQPVDHSM 146


>11_06_0720 -
           26617665-26617781,26617851-26617924,26618218-26618331,
           26619375-26619399,26619564-26619620,26620273-26622888
          Length = 1000

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 397 ASTICKYSSICRTVCHYYHSFSKHFIC 317
           A+T+C   S+C +  H+ H    H +C
Sbjct: 246 ATTLCSLMSVCASSDHFSHGSGIHSLC 272


>06_03_1318 -
           29282562-29282566,29282727-29282810,29282913-29283380,
           29283735-29283917,29284362-29284467,29284627-29284651,
           29284736-29284855,29284920-29284997,29285646-29285774,
           29285976-29285989,29286168-29287944,29288344-29288489,
           29288921-29291029
          Length = 1747

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 314 GCIHHNFEILSKRTSLHGVVPKAGMVYSDL 225
           GC + N E L +   LHGVV KAG + S++
Sbjct: 903 GC-YQNGEWLEQGRQLHGVVLKAGWIPSNI 931


>03_02_0466 -
           8690469-8690522,8691008-8691113,8691216-8691457,
           8691477-8691546,8692224-8692499,8693058-8693137,
           8693408-8693489,8693566-8693663,8693868-8693936,
           8694015-8694113,8694681-8694737,8694874-8695039,
           8695152-8695196,8695286-8695347,8695425-8695532,
           8695719-8695769,8695843-8695944,8696362-8696448,
           8696560-8696823,8696977-8697189,8697337-8697398,
           8697517-8697849,8697943-8698138
          Length = 973

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 41  DSIFIFVSNIGGYEITYKLLDLYAQGLTRNDVQFHDFEPILRKT 172
           DS+F  +SN G Y++T         G+  N ++ +  +P+L+KT
Sbjct: 662 DSLFSLISNRGDYDVT-------MDGIHENFLKLNYHDPMLQKT 698


>03_02_0463 -
           8673313-8673639,8674040-8674126,8674710-8674790,
           8674896-8675048,8675129-8675185,8675293-8675569,
           8675634-8675749,8676372-8676523,8676627-8676816,
           8676935-8677345
          Length = 616

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
 Frame = -1

Query: 239 VYSDLLN-DKLWQRLFQNHLQNM--RSSLE*A-QNHETEHHFLLDLVHKDQAAYMLFHSH 72
           +Y D+L  D + ++++  H  N+   ++ E A Q+ ++  + LL  VH     Y+LFH H
Sbjct: 239 LYDDVLVFDNVEKKVYVIHWVNLDRHATTEDAFQDGKSRLNLLLSKVHNSNVFYILFHFH 298


>01_05_0680 - 24238840-24241242
          Length = 800

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = -1

Query: 266 HGVVPKAG---MVYSDLLNDKLWQ 204
           HG++P      MV   LLNDKLW+
Sbjct: 346 HGLLPSTNEFNMVIKGLLNDKLWK 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,511,938
Number of Sequences: 37544
Number of extensions: 197231
Number of successful extensions: 434
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)