Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_H18
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    28   0.61 
SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...    26   2.5  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    26   2.5  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    25   3.3  
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    25   5.7  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   5.7  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    25   5.7  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   5.7  
SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    24   7.6  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    24   7.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   10.0 
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    24   10.0 

>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.9 bits (59), Expect = 0.61
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 147 RVRRDAHGALTLNSDGTSGAGVKVPFAGNDKNIVSAI-GSLDLTNRQKLGAATAGVALDN 323
           R+ RD    +  N DGTSGA   + F G  K +   +  S D+++  K  AA   VALD 
Sbjct: 442 RIVRDIADVIEDNMDGTSGALYAIFFHGFAKGMKDTLEKSKDISS--KTWAAGLKVALDT 499

Query: 324 V 326
           +
Sbjct: 500 L 500



 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 303 AGVALDNVNGHGVSLTDTHIPG 368
           A  A+DN+   G SL   H+PG
Sbjct: 178 AKAAIDNLVSIGASLAHVHVPG 199


>SPBP8B7.24c |atg8||autophagy associated protein Atg8
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 72 FERRRTERQAIKDDLPEHVCVL 7
          FE+R+TE Q I++  P+ + V+
Sbjct: 11 FEKRKTESQRIREKYPDRIPVI 32


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -2

Query: 310 TPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSELSVRAPCASLRTLELVN 134
           TP + APS      S   ++  + ++ P +  T +P+P + S  S  +P  SLR   L  
Sbjct: 299 TPGIDAPSDLEAKFSDLGVSSVVSVTSPLQSCTNSPSPPLSSPASSASPSESLRNESLGI 358

Query: 133 SSGSS 119
            S  S
Sbjct: 359 KSAKS 363


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -2

Query: 331 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSE 185
           P T  S++  V++        S    + T+ ++ PA  + TP P  PS+
Sbjct: 155 PSTTDSSSTDVSSSDSVSTSASSSNASNTVSVTSPASSSATPLPNQPSQ 203


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -3

Query: 135 IVQAPHSVEYSKQVR*QSGIGFERRRTERQAIKDDLPE 22
           ++ APH + Y  ++  ++G+ FE++  E   IK+ + E
Sbjct: 142 LINAPHYLNYMYKLLIEAGVEFEKK--ELSHIKETVEE 177


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = -2

Query: 334 WPFTLSSATPAVAAPSFCLLVKSKEPI-ALTIFLSLPAKGTLTPAPEVPSELS 179
           +PF   S  P    PS+  LV    P   LT+     + G L+ A  +PS  S
Sbjct: 271 YPFQQPSYNPNALVPSYTTLVSQLPPSPCLTV-----SSGPLSTASSIPSNCS 318


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 235 SLPAKGTLTPAPEVPSELSVRAPCASLRTLELVNS 131
           S+P  G     P VP + S +A   SLRT  ++ S
Sbjct: 210 SIPKVGETYNDPSVPKDFSRKAIHESLRTKNILQS 244


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 235 SLPAKGTLTPAPEVPSE 185
           SLPA GT TP+P V  +
Sbjct: 725 SLPAAGTATPSPVVSQQ 741


>SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 39  LLLVALCVGVQSRYLIVSEPVYYIQHYEEPELLTSSRV 152
           LL+ A  + +Q  +  +  P+  ++H  E ELL ++RV
Sbjct: 8   LLVFASFLIIQGAFATLVAPIGDLEHLSEIELLYTNRV 45


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 186 SDGTSGAGVKVPFAGNDKNIVSAIGSLDLTNRQ 284
           SDGTS   V V   GN   I S+ G +D+ N Q
Sbjct: 442 SDGTSVRSVCVSCCGNFGLIGSSKGVVDVYNMQ 474


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -2

Query: 259 PIALTIFLSLPAKGTLTPAPEVPSELSVRAPCASLRTL-ELVNSSG 125
           PIA  +   +PA   L PA   P      AP A + ++ EL    G
Sbjct: 454 PIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELPQQDG 499


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 967

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 270  LTNRQKLGAATAGVALDNVNGHGVSLTDTHIPGFGDKV 383
            +T+ ++  A    +A  N+ G    +  TH+PG G  V
Sbjct: 922  ITDLKQYCATEMNLANRNMGGRLSQIISTHLPGDGQSV 959


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,605,664
Number of Sequences: 5004
Number of extensions: 29573
Number of successful extensions: 96
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)