Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_H18
(398 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315... 31 0.25
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97... 28 2.4
05_04_0113 + 18085705-18085833,18086442-18086885 28 3.1
04_02_0006 + 8455219-8457469,8457560-8457924 28 3.1
02_03_0247 - 16809742-16809780,16810070-16810298,16810381-168105... 28 3.1
12_02_0591 + 20864861-20867329 27 4.1
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 27 4.1
01_06_1026 + 33907465-33907661,33907699-33907741,33907938-339085... 27 4.1
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085... 27 4.1
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 27 5.5
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 27 5.5
03_06_0262 + 32730927-32731634,32731713-32732159,32732247-327331... 27 5.5
01_01_0070 - 542603-542686,542803-543441 27 5.5
08_02_1122 + 24468086-24468276,24468726-24468976,24469092-244691... 27 7.2
07_03_0342 + 16963528-16963598,16963668-16964235,16964350-169647... 27 7.2
11_06_0759 + 27008772-27009571,27010457-27010576,27011683-270119... 26 9.5
10_03_0036 - 7286425-7286463,7286686-7286974,7287306-7288192,728... 26 9.5
10_01_0169 - 1899491-1899666,1901358-1901638,1902468-1902477,190... 26 9.5
09_03_0084 + 12198185-12198460,12198560-12198700,12198782-121991... 26 9.5
03_02_0041 + 5229308-5229575,5229974-5230140,5230694-5230906 26 9.5
>08_02_1455 +
27230134-27231110,27231195-27231327,27231417-27231501,
27233372-27233571
Length = 464
Score = 31.5 bits (68), Expect = 0.25
Identities = 25/71 (35%), Positives = 32/71 (45%)
Frame = -2
Query: 370 NPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVP 191
+PG V +P P LSSA A AA S+ L S P A P +P P++P
Sbjct: 17 SPGQPPVVPRSPTPLDLSSAAAAAAAASYRRLSPSLRPPA------HPQARLPSPYPQIP 70
Query: 190 SELSVRAPCAS 158
S S A +S
Sbjct: 71 SSSSAAAAGSS 81
>09_01_0066 -
978018-978500,978588-979034,979113-979412,979521-979855,
980325-980703
Length = 647
Score = 28.3 bits (60), Expect = 2.4
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = -2
Query: 358 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 185
C S L P ++ SA + P+ C L+ P F L A+G P PE
Sbjct: 467 CASTELAENPTSVDSAVDHITEPTSCTLIVRVMP----TFTVLAAEGLAYKPTPETRVHG 522
Query: 184 LSVRAPCASLR 152
+RA CA ++
Sbjct: 523 AQLRADCAKVQ 533
>05_04_0113 + 18085705-18085833,18086442-18086885
Length = 190
Score = 27.9 bits (59), Expect = 3.1
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Frame = +3
Query: 120 EEPELLTSSRVRRDAHGALTLNSD-------GTSGAGVKVPFAGNDKNIVSAIGSLDL-- 272
E+ TS+R R G LT+ ++ G GAG ++P AG D + G +
Sbjct: 30 EDSPAATSTRKRLVGSGKLTIVAEIPRLALGGGGGAGERLPAAGEDSAAATNTGKCQVVG 89
Query: 273 TNRQKLGAATAGVALD 320
++ + AA+AG+ D
Sbjct: 90 SSLAAMVAASAGIQPD 105
>04_02_0006 + 8455219-8457469,8457560-8457924
Length = 871
Score = 27.9 bits (59), Expect = 3.1
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -2
Query: 394 PAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSL 230
P +V+L N G+C ++ + P SS PA + LL+K I + +F +L
Sbjct: 440 PNSVSLEGNKGLCANIHILNLPICPSS--PAKTKNNKRLLLKVIPSITIALFSAL 492
>02_03_0247 -
16809742-16809780,16810070-16810298,16810381-16810551,
16810630-16811516,16811604-16812050,16812129-16812836
Length = 826
Score = 27.9 bits (59), Expect = 3.1
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -2
Query: 358 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 185
C S L P ++ SA + P+ C L P F L A+G P PE
Sbjct: 365 CASTELAENPTSIDSAVDHITEPTSCTLTVRVMP----TFTVLAAEGLAYKPTPETTVHG 420
Query: 184 LSVRAPCASLR 152
+RA CA ++
Sbjct: 421 AQLRADCAKVQ 431
>12_02_0591 + 20864861-20867329
Length = 822
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 395 AGSCHLVSEPGDVCIRETY 339
AG CHL EPG V +R +
Sbjct: 299 AGECHLAGEPGLVAVRRFF 317
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 27.5 bits (58), Expect = 4.1
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -2
Query: 331 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPE-VPSELSVRAPCASL 155
P T+S++T AV+ + + + + T LPA T APE +P+ S AP S
Sbjct: 310 PTTISTSTAAVSVSAETISSPVRPIVPTTTAAVLPASVTARSAPENIPAVTS--APANSS 367
Query: 154 RTLE 143
TL+
Sbjct: 368 STLK 371
>01_06_1026 +
33907465-33907661,33907699-33907741,33907938-33908512,
33910820-33911693
Length = 562
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 27 EDRLLLLVALCVGVQSRYLIVSEPVYYIQHY 119
E+RLL V V Q RY+ + + + Y+QH+
Sbjct: 530 EERLLEKVRFGVMAQCRYVSIDDGLRYLQHF 560
>01_05_0495 + 22705697-22705765,22705903-22706025,22708429-22708586,
22709162-22709206,22709367-22709445,22709522-22709595,
22709703-22709809,22711116-22711301,22711882-22711920,
22712020-22712086,22712207-22712281,22713113-22713347,
22713425-22713755,22714530-22714710,22714810-22714950,
22715041-22715302,22715503-22715892,22717179-22717735,
22718421-22718557,22718672-22718853,22718959-22719339,
22719420-22719545,22719635-22719700,22720056-22721839,
22721914-22722193,22722386-22722616,22723067-22723588,
22723683-22723815,22723937-22724193
Length = 2405
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 1 AFQYTNMFGKIVFYCLSLCASAFKADT*LS-ANLF 102
A Q + KIVF C S+ +SA A+ LS ANLF
Sbjct: 2269 AMQMQDTQMKIVFNCFSMISSALGAEVSLSYANLF 2303
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Frame = +3
Query: 93 EPVY--YIQHYE---EPELLTSSRVRRDAHGALTLNSDGTSGAGVKVPFAGND 236
EP Y + HY PEL+ R DA G + L D G +P G D
Sbjct: 157 EPFYGTKVSHYPPCPRPELVDGLRAHTDAGGLILLFQDDRFGGLQMIPNRGGD 209
>09_02_0322 -
7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 235 SLPAKGTLTPAPEVPSELSVRAP 167
S+P + +L PAP S+L V AP
Sbjct: 870 SIPVQNSLPPAPPSASQLQVHAP 892
>03_06_0262 +
32730927-32731634,32731713-32732159,32732247-32733133,
32733212-32733382,32733465-32733753,32733839-32733877,
32733983-32734021
Length = 859
Score = 27.1 bits (57), Expect = 5.5
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -2
Query: 358 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 185
C S L P ++ SA + P+ C L P F L A+G P PE
Sbjct: 365 CASTELAENPTSVDSAVDHITEPTSCTLTVRVMP----TFTVLAAEGLAYKPTPETRVHG 420
Query: 184 LSVRAPCASLR 152
+RA CA ++
Sbjct: 421 AQLRADCAKVQ 431
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 27.1 bits (57), Expect = 5.5
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Frame = -2
Query: 343 LTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIF--LSLPAKGTLTPAPEVPSEL-SVR 173
+TP P T +P A P L + P+A +LP T P E P+EL
Sbjct: 100 VTPPPVTPPPVSPPPATPPPALPPSTPPPVAAPAEAPAALPPATTPPPVAEAPAELPPAE 159
Query: 172 APCASLRTLELVNSSG 125
AP S N G
Sbjct: 160 APTKSKNKHRKKNKRG 175
>08_02_1122 +
24468086-24468276,24468726-24468976,24469092-24469182,
24469381-24469429,24469527-24469618,24469714-24469821,
24469912-24470046,24470153-24470563,24470664-24470805,
24470893-24470960,24471072-24471206,24471314-24471531,
24471634-24472004
Length = 753
Score = 26.6 bits (56), Expect = 7.2
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Frame = +3
Query: 114 HYEEPELLTSSRVRRDAHGALTLNSDGTSGAGVKVPFAGNDKNIVSAIGSLDLTNRQKLG 293
H E+P +T +D H T+ +DG +G + G + + SL +T + +
Sbjct: 592 HDEQPATVTGVIRAQDVHHLATVAADGWNGDVIVYSHIGGEVTCLPKNASLPVTLKTREY 651
Query: 294 AATAGVALDNVNGHGVSLTDTHIPGF---GDKVTA 389
V L ++ +GVS + G G VTA
Sbjct: 652 EVFTVVPLKKLD-NGVSFAAVGLIGMFNSGGAVTA 685
>07_03_0342 +
16963528-16963598,16963668-16964235,16964350-16964760,
16964848-16965051,16968663-16969032,16972466-16972601,
16972680-16972779,16972933-16973190,16973276-16973314,
16973420-16973458
Length = 731
Score = 26.6 bits (56), Expect = 7.2
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = -2
Query: 358 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLT--PAPEVPSE 185
C S L P ++ SA + P+ C L P T ++PA L P PE
Sbjct: 330 CASTELAENPTSVDSAVDHITEPTSCTLTVRVMP---TFTFTVPAAEGLAYKPTPETRVH 386
Query: 184 -LSVRAPCA 161
+RA CA
Sbjct: 387 GAQLRADCA 395
>11_06_0759 +
27008772-27009571,27010457-27010576,27011683-27011957,
27012516-27013783
Length = 820
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +3
Query: 192 GTSG--AGVKVPFAGNDKNIVSAIGSLDLT 275
G SG GVK P GN + +GS+D T
Sbjct: 531 GQSGFHGGVKFPVGGNPSKSLKVLGSIDST 560
>10_03_0036 -
7286425-7286463,7286686-7286974,7287306-7288192,
7288280-7288726,7288805-7288830,7288984-7289512
Length = 738
Score = 26.2 bits (55), Expect = 9.5
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -2
Query: 358 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 185
C S LT P ++ SA + P+ C L P F A+G P PE
Sbjct: 314 CASTELTENPTSVDSAVDYITEPTSCTLTVRVMP----TFTVPAAEGLAYKPTPETRVHG 369
Query: 184 LSVRAPCASLR 152
+RA CA ++
Sbjct: 370 AQLRADCAKVQ 380
>10_01_0169 -
1899491-1899666,1901358-1901638,1902468-1902477,
1902696-1902786,1903993-1904031,1904117-1904405,
1904488-1904658,1904737-1905623,1905711-1906157,
1906236-1906460,1906536-1906943
Length = 1007
Score = 26.2 bits (55), Expect = 9.5
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Frame = -2
Query: 358 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 185
C S L P + SA + P+ C L P F L A+G P PE
Sbjct: 340 CASTELAENPTLVDSAVDHITEPTSCTLTVRVMP----TFTVLAAEGLAYKPTPETRVHG 395
Query: 184 LSVRAPCASLR 152
+RA CA ++
Sbjct: 396 AQLRADCAKVQ 406
>09_03_0084 +
12198185-12198460,12198560-12198700,12198782-12199114,
12199197-12199344,12199424-12199494,12199709-12199801,
12200412-12200486,12200529-12200540
Length = 382
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 351 P*DLLRGRLHYPVPLQRLQRL 289
P +L + +HYP+P QR RL
Sbjct: 352 PAELKKSSVHYPLPAQRSNRL 372
>03_02_0041 + 5229308-5229575,5229974-5230140,5230694-5230906
Length = 215
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 397 LPAAVTLSPNPGMCVSVRLTPWPFT-LSSATPAVAAPSFCLLVKSKEPIAL 248
+ A ++ NPG V+ +T P SSATPA A L++ + + L
Sbjct: 29 MSAGAVMAANPGHYVAAVITSPPAAGASSATPAAAPVKHLKLLRPDDTLLL 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,883,400
Number of Sequences: 37544
Number of extensions: 210152
Number of successful extensions: 737
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -