Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_H18
         (398 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3 prot...    36   0.065
AF007194-1|AAC02272.1|  957|Homo sapiens mucin protein.                36   0.065
BC001940-1|AAH01940.2|  748|Homo sapiens hypothetical protein DK...    31   1.4  
AK074809-1|BAC11221.1|  748|Homo sapiens protein ( Homo sapiens ...    31   1.4  
AB162218-1|BAD36741.1|  748|Homo sapiens hFLEG1 protein.               31   1.4  
AF179681-1|AAF72107.1| 1156|Homo sapiens unknown protein.              30   3.3  
Y11354-1|CAA72189.1| 1083|Homo sapiens subunit of RNA polymerase...    29   5.7  
AY623115-1|AAT38111.1| 1085|Homo sapiens TAF4 RNA polymerase II,...    29   5.7  
AL137077-2|CAI11045.1| 1085|Homo sapiens TAF4 RNA polymerase II,...    29   5.7  
AL109911-2|CAI19182.1| 1085|Homo sapiens TAF4 RNA polymerase II,...    29   5.7  
AB038784-1|BAB12118.1|  877|Homo sapiens intestinal mucin protein.     29   5.7  
AB038782-1|BAB12116.1|  878|Homo sapiens intestinal mucin protein.     29   5.7  

>AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3
           protein.
          Length = 1217

 Score = 35.5 bits (78), Expect = 0.065
 Identities = 24/79 (30%), Positives = 37/79 (46%)
 Frame = -2

Query: 382 TLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPA 203
           T    PG   S+  T    T S +TP++++ +    V +      + F +  ++  +TP 
Sbjct: 313 TSHSTPGFTSSITTTE---TTSESTPSLSSSTIYSTVSTSTTAITSHFTT--SETAVTPT 367

Query: 202 PEVPSELSVRAPCASLRTL 146
           P  PS LS   P  SLRTL
Sbjct: 368 PVTPSSLSTDIPTTSLRTL 386


>AF007194-1|AAC02272.1|  957|Homo sapiens mucin protein.
          Length = 957

 Score = 35.5 bits (78), Expect = 0.065
 Identities = 24/79 (30%), Positives = 37/79 (46%)
 Frame = -2

Query: 382 TLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPA 203
           T    PG   S+  T    T S +TP++++ +    V +      + F +  ++  +TP 
Sbjct: 313 TSHSTPGFTSSITTTE---TTSESTPSLSSSTIYSTVSTSTTAITSHFTT--SETAVTPT 367

Query: 202 PEVPSELSVRAPCASLRTL 146
           P  PS LS   P  SLRTL
Sbjct: 368 PVTPSSLSTDIPTTSLRTL 386


>BC001940-1|AAH01940.2|  748|Homo sapiens hypothetical protein
           DKFZp762E1312 protein.
          Length = 748

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -2

Query: 349 VRLTPWPFTLSSATPAVAAPSFCLLVKSKEP 257
           VR+TP P   S A+PAV AP +C  +  K P
Sbjct: 175 VRVTPLP---SLASPAVPAPGYCSRISGKSP 202


>AK074809-1|BAC11221.1|  748|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90328 fis, clone NT2RP2001921. ).
          Length = 748

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -2

Query: 349 VRLTPWPFTLSSATPAVAAPSFCLLVKSKEP 257
           VR+TP P   S A+PAV AP +C  +  K P
Sbjct: 175 VRVTPLP---SLASPAVPAPGYCSRISGKSP 202


>AB162218-1|BAD36741.1|  748|Homo sapiens hFLEG1 protein.
          Length = 748

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -2

Query: 349 VRLTPWPFTLSSATPAVAAPSFCLLVKSKEP 257
           VR+TP P   S A+PAV AP +C  +  K P
Sbjct: 175 VRVTPLP---SLASPAVPAPGYCSRISGKSP 202


>AF179681-1|AAF72107.1| 1156|Homo sapiens unknown protein.
          Length = 1156

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = -2

Query: 331 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSELSVRAPCASL 155
           P T    TP  + PSF   V  + PI++ +    P    TL P P   + +    P  S 
Sbjct: 492 PLTSDPPTPPSSTPSFKPPVTRESPISMCVDSPPPLSFLTLLPVPSTGTSVITSKPMNST 551

Query: 154 RTLELVNSSGSS 119
             +  V ++ S+
Sbjct: 552 SVISTVTTNASA 563


>Y11354-1|CAA72189.1| 1083|Homo sapiens subunit of RNA polymerase II
           transcription factor protein.
          Length = 1083

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 27/76 (35%), Positives = 32/76 (42%)
 Frame = -2

Query: 394 PAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGT 215
           PAA+   P P    +V  TP PF  ++A PA AAPS         P A       PA  T
Sbjct: 220 PAALLPLPKPAAPGTVIQTP-PFVGAAAPPAPAAPSPPAAPAPAAPAAAPP-PPPPAPAT 277

Query: 214 LTPAPEVPSELSVRAP 167
           L   P  P+     AP
Sbjct: 278 LARPPGHPAGPPTAAP 293


>AY623115-1|AAT38111.1| 1085|Homo sapiens TAF4 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 135kD
           protein.
          Length = 1085

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 27/76 (35%), Positives = 32/76 (42%)
 Frame = -2

Query: 394 PAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGT 215
           PAA+   P P    +V  TP PF  ++A PA AAPS         P A       PA  T
Sbjct: 222 PAALLPLPKPAAPGTVIQTP-PFVGAAAPPAPAAPSPPAAPAPAAPAAAPP-PPPPAPAT 279

Query: 214 LTPAPEVPSELSVRAP 167
           L   P  P+     AP
Sbjct: 280 LARPPGHPAGPPTAAP 295


>AL137077-2|CAI11045.1| 1085|Homo sapiens TAF4 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 135kD
           protein.
          Length = 1085

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 27/76 (35%), Positives = 32/76 (42%)
 Frame = -2

Query: 394 PAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGT 215
           PAA+   P P    +V  TP PF  ++A PA AAPS         P A       PA  T
Sbjct: 222 PAALLPLPKPAAPGTVIQTP-PFVGAAAPPAPAAPSPPAAPAPAAPAAAPP-PPPPAPAT 279

Query: 214 LTPAPEVPSELSVRAP 167
           L   P  P+     AP
Sbjct: 280 LARPPGHPAGPPTAAP 295


>AL109911-2|CAI19182.1| 1085|Homo sapiens TAF4 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 135kD
           protein.
          Length = 1085

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 27/76 (35%), Positives = 32/76 (42%)
 Frame = -2

Query: 394 PAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGT 215
           PAA+   P P    +V  TP PF  ++A PA AAPS         P A       PA  T
Sbjct: 222 PAALLPLPKPAAPGTVIQTP-PFVGAAAPPAPAAPSPPAAPAPAAPAAAPP-PPPPAPAT 279

Query: 214 LTPAPEVPSELSVRAP 167
           L   P  P+     AP
Sbjct: 280 LARPPGHPAGPPTAAP 295


>AB038784-1|BAB12118.1|  877|Homo sapiens intestinal mucin protein.
          Length = 877

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 214 LTPAPEVPSELSVRAPCASLRTL 146
           +TP P  PS LS   P  SLRTL
Sbjct: 24  VTPTPVTPSSLSTDIPTTSLRTL 46


>AB038782-1|BAB12116.1|  878|Homo sapiens intestinal mucin protein.
          Length = 878

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 214 LTPAPEVPSELSVRAPCASLRTL 146
           +TP P  PS LS   P  SLRTL
Sbjct: 24  VTPTPVTPSSLSTDIPTTSLRTL 46


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,600,717
Number of Sequences: 237096
Number of extensions: 1157899
Number of successful extensions: 3028
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3028
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)