Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_H15
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    27   2.6  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   5.9  
SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ...    25   5.9  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   5.9  

>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 132 YLSSRELNISSIHNSITELSRASKRWTTCIVKPQS 236
           Y + ++   +S+HN+  +L  A+KR   C+++  S
Sbjct: 29  YRNKKQKKWASVHNNEAQLHSANKRNDNCLIQRSS 63


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/57 (19%), Positives = 26/57 (45%)
 Frame = +3

Query: 75   VILQTESNWPITLTFNTTLYLSSRELNISSIHNSITELSRASKRWTTCIVKPQSISQ 245
            ++ + + N   ++T   +  L S    ++ + N +  L+ +  +W   I KP   S+
Sbjct: 903  ILYEKQKNLQASIT-EVSKQLKSNSKKVTVLRNKLNILNNSLSKWKCLIKKPSDFSE 958


>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 182 RVIQGIQALDNLHSKATINITAGGVGHTFVNL 277
           +V   IQ +DNL  K    I  GG+  TF+ +
Sbjct: 213 KVADKIQLIDNLLDKVNRLIICGGMAFTFLKV 244


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 65  LVIGNTANRVKLANHTDVQYNAIPFIKRV 151
           LV GN  +RV + + T +  N++PF K +
Sbjct: 818 LVFGNMEDRVIIHSVTRINENSVPFNKNL 846


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,809
Number of Sequences: 5004
Number of extensions: 36056
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)