Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_H15
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0347 + 2514831-2515068,2515126-2515304,2515514-2515747,251...    28   4.6  
12_01_0313 + 2388488-2388560,2389285-2389462,2390221-2390331,239...    28   6.0  

>06_01_0347 +
           2514831-2515068,2515126-2515304,2515514-2515747,
           2515882-2516137,2516300-2516496
          Length = 367

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +2

Query: 50  AEGSHLVIG-NTANRVK-LANHTDVQYNAIPFIKRVKYFFYSQLDNRVIQGIQALDNLHS 223
           A G +L+IG N A+      +HT + Y+AIP  ++++YF   Q     + G     ++ +
Sbjct: 113 ASGKNLLIGANFASAGSGYYDHTALLYHAIPLSQQLEYFKEYQSKLAAVAGSSQAQSIIN 172

Query: 224 KATINITAG 250
            +   I+AG
Sbjct: 173 GSLYIISAG 181


>12_01_0313 +
           2388488-2388560,2389285-2389462,2390221-2390331,
           2391280-2391362,2391826-2392027,2392078-2392101,
           2392234-2392408,2392482-2392683,2393897-2394036
          Length = 395

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +2

Query: 143 KRVKYFFYSQLDNRVIQGIQALDNLHSKATINITAGGVGHTFVNLR---MKSERGRGLDY 313
           K V Y  Y+ L NR+ +G+Q   N   + +   T GG+   FV  R   ++ +    +DY
Sbjct: 228 KAVGYHEYADLINRINKGVQLYSNSMQELSQKGT-GGLSEAFVAFRNYFVEKDVFEEIDY 286

Query: 314 DIG 322
             G
Sbjct: 287 KFG 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,923,678
Number of Sequences: 37544
Number of extensions: 234224
Number of successful extensions: 590
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)