Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_H10
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   2.6  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   2.6  
SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyce...    26   3.5  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    25   4.6  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   6.1  
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    25   8.0  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   8.0  
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch...    25   8.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.0  

>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -1

Query: 225 GCNTSADKVPTSLFPIVRLTCPWNTKIPKFGTS-GIDALNPFGLNTSILTSGT 70
           GC+ S+  V +     V ++CP  T I   GTS     + P   +T  +T+ T
Sbjct: 24  GCSASSTSVQSDTTNQVSVSCPKYTTIYTSGTSPDTKTIYPESTSTKSITTST 76


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -1

Query: 225 GCNTSADKVPTSLFPIVRLTCPWNTKIPKFGTS-GIDALNPFGLNTSILTSGT 70
           GC+ S+  V +     V ++CP  T I   GTS     + P   +T  +T+ T
Sbjct: 24  GCSASSTSVQSDTTNQVSVSCPKYTTIYTSGTSPDTKTIYPESTSTKSITTST 76


>SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -3

Query: 448 RKLIPPRTVVTDGLHTTLSPAVITRDLLPGSGTVKLKLS--LIYPCLFIDTNMVIIDRVS 275
           R L  P  V +  L  + + ++   D L   GT + + S  ++  C FIDT   I+D + 
Sbjct: 217 RSLNIPDAVPSQYLRNSQNFSMAAGDFLEVYGTEESRDSFQVVATCFFIDTTKNILDYLD 276

Query: 274 GIKH 263
            IK+
Sbjct: 277 TIKN 280


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 272 PGDTINYYHICVYKQTRVYQRQ 337
           P +TIN YH+ V   +RV ++Q
Sbjct: 35  PNETINQYHVIVGDGSRVPRKQ 56


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +2

Query: 23  VNIGAFYKSILCQQSKVPDVKIEVFRPKGFRASIPDVPNLGIFVFQGHVNRTIGNNDV 196
           +N+ +F K+I C      DV +    PKG      +V  L ++ F+  VN   G NDV
Sbjct: 410 LNLQSFVKNICC------DVPLP---PKGLLQLQVNVGPLNLYAFRSPVNEIPGWNDV 458


>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 382 ITRDLLPGSGTVKLKLSLIYPCL 314
           +TR LL  +G V++K S +YP +
Sbjct: 16  VTRMLLVSNGKVQVKKSALYPVM 38


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 279 SPGLSIKFGSSYTHLPLVGCNTSADKVPTSLFPI 178
           +P  ++KF       P+V  +T  DK+P +  P+
Sbjct: 87  TPPSALKFSKKKISRPVVSEDTFKDKLPRATIPV 120


>SPCC1442.09 |trp3||anthranilate synthase component
           I|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 489

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +2

Query: 233 GRWVYEDPNLMLNPGDTINYYHICVYKQTRVY 328
           GRW YED N+     DT       VYK   VY
Sbjct: 417 GRWGYEDDNM-----DTCIAIRTMVYKDGTVY 443


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = +2

Query: 257 NLMLNPGDTINYYHICVYKQT--RVYQRQLEF 346
           +L LN     NY H C Y  T    YQ  L+F
Sbjct: 198 DLCLNSSSLANYLHGCFYHNTLSHPYQDALKF 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,355
Number of Sequences: 5004
Number of extensions: 50244
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)