Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_H10
         (486 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0711 - 26508228-26508488,26508970-26509084,26509179-265094...    28   4.6  
06_03_0210 + 17968594-17968713,17968895-17969212,17969307-179698...    28   4.6  
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321...    27   6.0  

>11_06_0711 -
           26508228-26508488,26508970-26509084,26509179-26509451,
           26509629-26510197,26510489-26510597,26511002-26511544,
           26511645-26511763,26511893-26512120,26512199-26512315,
           26512410-26512506,26513169-26513569
          Length = 943

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = -3

Query: 310 IDTNMVIIDRVSGIKHQVWVFVHPS 236
           +  + +I D  + ++ Q+W+++HPS
Sbjct: 241 LSNSQIISDERNSLRRQLWIWIHPS 265


>06_03_0210 +
           17968594-17968713,17968895-17969212,17969307-17969828,
           17970103-17970384
          Length = 413

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 481 HRSNLRTVRHQRKLIPPRTVVTDGLHTTLSPAVITRDLLPGSG 353
           HRS+       R   P  +  TDG+H  LS  V   D L G+G
Sbjct: 174 HRSSHVAAERLRIEAPAASRNTDGIHVGLSSHVTVADSLVGTG 216


>02_03_0180 -
           16031366-16031445,16031950-16032022,16032148-16032186,
           16032434-16032715,16032790-16032948,16033034-16033390,
           16033482-16033622,16033919-16034045,16034121-16034263,
           16034740-16034917,16035019-16035552,16035628-16035812,
           16036551-16036637,16036710-16036850,16036896-16037175,
           16037944-16038020,16038326-16039138,16039292-16039801,
           16039926-16040056,16040192-16040246,16040364-16040564,
           16040640-16040909,16041103-16041184,16041271-16041434,
           16041532-16041690,16041762-16042083,16042158-16042544,
           16042811-16042999,16043233-16043317,16043458-16043753,
           16043862-16043965,16044484-16044513,16044602-16044817,
           16044923-16045540,16045718-16045993,16046619-16046762,
           16046854-16046962,16047291-16047475,16047557-16047670,
           16048348-16048479,16048929-16049249,16049424-16049891,
           16054482-16054547,16054691-16054828,16054917-16055015,
           16057098-16057194,16057661-16057761,16057858-16058085,
           16059175-16059381,16059451-16059571,16059921-16059988,
           16060148-16060213,16060396-16060509,16060949-16061300,
           16063571-16063663,16063764-16063922,16064224-16064287,
           16064385-16064577,16064673-16064710,16065510-16065645,
           16065726-16065914,16065994-16066095,16067660-16067777,
           16067861-16067964,16070338-16070346,16071428-16071475,
           16071581-16071676,16072430-16072533,16073964-16074045,
           16076573-16076601,16076708-16076963
          Length = 4246

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 118 CPKSFRSEHFYFNIGHFTLLAQD 50
           C     +EHF  ++GHFTL  +D
Sbjct: 826 CQPLLGNEHFVLDLGHFTLHTRD 848


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,874,538
Number of Sequences: 37544
Number of extensions: 342661
Number of successful extensions: 840
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)