Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_H10
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    31   0.34 
AL031630-21|CAA20997.2|  736|Caenorhabditis elegans Hypothetical...    28   4.1  
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p...    27   9.5  
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like...    27   9.5  
AF016685-13|AAG24141.2|  212|Caenorhabditis elegans Hypothetical...    27   9.5  

>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
            protein Y66D12A.14 protein.
          Length = 2870

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 160  LEHEDSQIWHIWYRCPKSFRSEHFYFNIGHFTLLAQDRFI 41
            LE + S IW     CP+   S+HF+   GH  LL + R +
Sbjct: 2585 LESDLSSIWTSLLNCPEPSPSDHFFLIGGHSLLLVRLRHL 2624


>AL031630-21|CAA20997.2|  736|Caenorhabditis elegans Hypothetical
           protein Y38H6C.20 protein.
          Length = 736

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 56  CQQSKVPDVKIEVFRPKGFRASIPDVPNLGIF 151
           C    VPDV I     KGFR   PD  N+ I+
Sbjct: 616 CPYYNVPDVGIRGLVEKGFRLQKPDGCNIQIY 647


>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
            F15B9.7 protein.
          Length = 2577

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 352  TVKLKLSLIYPCLFIDTNMVIIDRVSGIKHQVWVF 248
            T  L + +++PCL   T   + D+ S   H +W+F
Sbjct: 2308 TTSLLVGIVFPCLISFTTFFVTDQCSLSPH-LWLF 2341


>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
            protein F15B9.7 protein.
          Length = 2577

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 352  TVKLKLSLIYPCLFIDTNMVIIDRVSGIKHQVWVF 248
            T  L + +++PCL   T   + D+ S   H +W+F
Sbjct: 2308 TTSLLVGIVFPCLISFTTFFVTDQCSLSPH-LWLF 2341


>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
            protein FMI-1 protein.
          Length = 2596

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 352  TVKLKLSLIYPCLFIDTNMVIIDRVSGIKHQVWVF 248
            T  L + +++PCL   T   + D+ S   H +W+F
Sbjct: 2327 TTSLLVGIVFPCLISFTTFFVTDQCSLSPH-LWLF 2360


>AF016685-13|AAG24141.2|  212|Caenorhabditis elegans Hypothetical
           protein F59E11.5 protein.
          Length = 212

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 39  FINLSCANRVKCPMLK*KCSDRKDLGHLYQMCQIWESSCSKGMSTGR*EI 188
           F+ L CA  +KC  ++   +D    G +Y   + + S C++ +   R EI
Sbjct: 90  FVTLQCAREIKCRAIRNILNDISICGFIYYYTKEF-SECAEKLYVKRNEI 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,491,323
Number of Sequences: 27780
Number of extensions: 289650
Number of successful extensions: 747
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)