Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_H06
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638     29   3.0  
01_01_0056 + 422141-422379,422524-422620,422697-422774,422871-42...    29   3.0  
11_06_0648 + 25873779-25874279,25874418-25875548                       28   5.2  
09_02_0121 + 4502628-4502696,4503727-4503829,4504205-4504328,450...    27   9.0  
07_01_0248 - 1821340-1821996,1823619-1823761,1824239-1824453,182...    27   9.0  

>12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638
          Length = 504

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 503 PTTQQCWLMVNGKWWAYFWSRTPSRINH 420
           PT + C   V  K W + W  TP R+++
Sbjct: 69  PTREACTTQVLAKRWRHLWRSTPLRLDY 96


>01_01_0056 +
           422141-422379,422524-422620,422697-422774,422871-422930,
           423019-423123,423743-423856,424145-424186,424380-424496,
           424568-424755,425502-425785,425869-425990,426118-426160,
           426265-426356,427331-427379,427623-427693,427793-427912,
           428586-428674,429266-429311,429926-429973
          Length = 667

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 446 SRTPSRINHGRCYETGSLYQQQTI 375
           SRTPS ++H   +E+G    QQTI
Sbjct: 16  SRTPSALHHNGAFESGEPSMQQTI 39


>11_06_0648 + 25873779-25874279,25874418-25875548
          Length = 543

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 141 VPGCAGKRVNLQLILMEPQVLWSRYR*LETKITSSVLLAPLISL 272
           V  C  K    QL++   Q    R+R ++++I S +LL P+ISL
Sbjct: 88  VLSCQDKSAVYQLVMARRQA--DRFRDVQSRIDSYLLLVPVISL 129


>09_02_0121 +
           4502628-4502696,4503727-4503829,4504205-4504328,
           4505963-4506306,4506383-4506487,4507907-4508288,
           4509173-4509437,4509936-4510094,4511150-4511201,
           4511266-4511462,4512865-4513350,4513797-4514093
          Length = 860

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +3

Query: 405 FITTTMI--YPRRRSRPEICPPFPIYHQPTLLGGGLELFVKDKIGASASAAHTDFFTKND 578
           F+ TTM+  YP + S P  C    + H P     G+  FV   +G++  A  T     N 
Sbjct: 574 FLFTTMVRFYPDKVSLPSTCAMAAVDHLPQ----GINSFVLPSVGSTPLATPTPGAVPNS 629

Query: 579 YNLGGK-LNLFK 611
             +  + L LF+
Sbjct: 630 VGIPQQPLQLFR 641


>07_01_0248 -
           1821340-1821996,1823619-1823761,1824239-1824453,
           1825911-1826049,1826152-1826385,1826504-1826624
          Length = 502

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
 Frame = +2

Query: 398 NLFHNNDHDLSAKAFATRNM-------PTISHLPSTNTVGWWARII 514
           N FH N HD +  A  T NM         +S LP+ + + WW  I+
Sbjct: 171 NWFHRNGHDAACLASDTTNMIIFAGIQILLSQLPNFHKI-WWLSIV 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,893,462
Number of Sequences: 37544
Number of extensions: 355669
Number of successful extensions: 785
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)