Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_H05
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    26   2.7  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   6.2  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   6.2  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 172 NTQTITAVTWHSSSWMQS*EENHKIKTLIK 83
           N QT+ AV   +S  +Q  E NH+++ + K
Sbjct: 762 NNQTVEAVNTETSDKLQEKEANHELENIEK 791


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +2

Query: 176 YRISTLHQTWKWL---HQTIALHEYLISLSSADT 268
           + IS++++ WKW    H+   L E++ S    DT
Sbjct: 298 FLISSIYEIWKWCRIRHKAFLLDEHIRSNKFEDT 331


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 167 PNNHRSHLAFLLLDAK 120
           P  +R+HL FLLLD K
Sbjct: 577 PEAYRTHLFFLLLDTK 592


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,534
Number of Sequences: 5004
Number of extensions: 27678
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)