Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_H01
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   0.58 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   1.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   3.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   3.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   4.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.4  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.2 bits (50), Expect = 0.58
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -3

Query: 212 FNVVHLVHLTAPVRLTKIGADKNKLLKD*LNIY 114
           FN +H+++  A +++ +   D  +L  D L+ Y
Sbjct: 13  FNTLHIIYSVAGLKIFEANPDTKRLYDDLLSNY 45


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +1

Query: 16  SIEISRWRPVRA 51
           ++E+ RWRP+R+
Sbjct: 122 NLEVERWRPLRS 133


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 243 FHNNIIVDVYCRLF 284
           FHN I+ +VY R+F
Sbjct: 130 FHNIIMPNVYIRIF 143


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 243 FHNNIIVDVYCRLF 284
           FHN I+ +VY R+F
Sbjct: 130 FHNIIMPNVYIRIF 143


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 188 LTAPVRLTKIGADKNKLLK 132
           + APV LT    D+NK +K
Sbjct: 938 MIAPVALTAATCDQNKAVK 956


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +1

Query: 259 LLMCIVDCLF*RLSNVCEYHIIGFPYYHRQ 348
           L++C V+     LS +  + ++GF  + +Q
Sbjct: 316 LIVCTVNSCTSMLSGIVIFSVVGFMAHEQQ 345


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +1

Query: 259 LLMCIVDCLF*RLSNVCEYHIIGFPYYHRQ 348
           L++C V+     LS +  + ++GF  + +Q
Sbjct: 369 LIVCTVNSCTSMLSGIVIFSVVGFMAHEQQ 398


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,375
Number of Sequences: 438
Number of extensions: 1736
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)