Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_G23
         (220 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    24   3.1  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    24   3.1  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    23   4.1  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    23   5.5  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    23   5.5  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    23   7.2  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    23   7.2  
SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyce...    22   9.6  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    22   9.6  

>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 141 HPRVSPLLRLILILFDVVTRLFNKH 67
           H RV P L+   +L D +T  +N H
Sbjct: 255 HKRVIPFLQKPNLLMDFLTDAYNSH 279


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 103 YEDQPEQWANSRVRRQAGALTINSDGTSGA 192
           YE  PE + N   +R A AL  NS+   G+
Sbjct: 227 YEQDPEGFVNPYSKRGAAALA-NSENNKGS 255


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 113 SRSSGLTRGCAGKRVLSLSTLMVPPVLWSSTHNW 214
           +R S +     GKR+ SL  +  PP+ +S + ++
Sbjct: 213 TRKSSVKMSDLGKRIASLPVVKRPPIQFSISSDY 246


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 219 HCQLWVLDHSTGGTIRVDS 163
           HC  W LD S   ++ +DS
Sbjct: 223 HCTSWNLDMSKSNSLNLDS 241


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 22  LFLVSVLLVGVNSRY 66
           L+++SVL+VG+N  Y
Sbjct: 269 LYIISVLVVGINLPY 283


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = -2

Query: 198 DHSTGGTI----RVDSESTRLPAHPRVSPLLRLILILFDVVTRLFNKHV 64
           D STG T      V+       +HP +  LLRL++ +  V+   F   V
Sbjct: 57  DSSTGPTEIANPNVERRQEFKDSHPNIYSLLRLLISVLAVIVVFFTAWV 105


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 79  EPGYYIEQYEDQPEQ 123
           EP +Y E+ E++PE+
Sbjct: 788 EPSHYEEEEEEEPEE 802


>SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 214

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +1

Query: 70  LVEEPGYYIEQ-YEDQPEQWANSRV 141
           L+ EP   +E  YED   QW N R+
Sbjct: 8   LLIEPTTEVENDYEDLCTQWVNERM 32


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 174 RVDSESTRLPAHPRVSPLLRLILILFDVVTRL 79
           +VDS   +  A     P+L L++I+++ + RL
Sbjct: 104 KVDSADFQYSAFRENMPILLLVIIVYNFLWRL 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 784,905
Number of Sequences: 5004
Number of extensions: 11232
Number of successful extensions: 29
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)