Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_G23
         (220 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0256 + 21331396-21332268                                         32   0.055
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440...    27   1.6  
07_01_0476 - 3593555-3594253,3594684-3594850,3594866-3594964,359...    27   2.1  
02_02_0412 - 9950286-9950380,9950530-9951203,9951402-9951580,995...    26   3.6  
02_05_0432 + 28936293-28936796,28937382-28939250                       26   4.7  
06_03_1100 - 27592526-27592753,27594942-27595070                       25   6.3  
06_03_0667 - 23290585-23290962                                         25   8.3  
05_01_0162 - 1095020-1095202,1096114-1096188,1096939-1097039,109...    25   8.3  
04_01_0046 + 510721-510790,511048-511121,511459-511729,511865-51...    25   8.3  

>02_04_0256 + 21331396-21332268
          Length = 290

 Score = 32.3 bits (70), Expect = 0.055
 Identities = 21/54 (38%), Positives = 27/54 (50%)
 Frame = -2

Query: 195 HSTGGTIRVDSESTRLPAHPRVSPLLRLILILFDVVTRLFNKHVTAVDADQENR 34
           HS    I + S + RL AHP   P +RLIL+  D +  LF     A  AD + R
Sbjct: 129 HSPSDLISLLSRAQRLLAHPGRLPPVRLILV--DSIASLFRADFDASPADLKRR 180


>08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,
            44090-44322,45308-45412,45531-45705,46443-46658
          Length = 977

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 43   LVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTINSDGTSGA 192
            L G+ SR V    P + ++ Y D+ EQW   R R  +  L I+ + + G+
Sbjct: 886  LTGLGSRIV---SPVFGLQSYSDKGEQWFQLR-RPDSKQLQIDGESSKGS 931


>07_01_0476 -
           3593555-3594253,3594684-3594850,3594866-3594964,
           3595620-3595806,3595880-3595948,3596551-3596752,
           3597124-3597362,3598374-3598637
          Length = 641

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 132 LEGAPASGCSHYQL*WYLRCYGQVPITG 215
           L G P  G  ++ +  YLRCYG +   G
Sbjct: 302 LNGVPGCGFLNHAINLYLRCYGSLSYHG 329


>02_02_0412 -
           9950286-9950380,9950530-9951203,9951402-9951580,
           9952578-9952633,9953233-9953262,9953820-9953982
          Length = 398

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 86  VTTSNSMRISRSSGLTRGCAGKRVLSLSTLMV 181
           VT S  + + R   +  GC  KRVL+L+  +V
Sbjct: 290 VTQSKELLMPRFDKILSGCTAKRVLTLAKQLV 321


>02_05_0432 + 28936293-28936796,28937382-28939250
          Length = 790

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 73  VEEPGYYIEQYEDQPEQWANSRV 141
           V  P   + + E+ PEQW  SR+
Sbjct: 97  VRSPELVVPELEELPEQWRRSRI 119


>06_03_1100 - 27592526-27592753,27594942-27595070
          Length = 118

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -2

Query: 177 IRVDSESTRLPAHPRVSPLLRLILILFDVVTRLFNKHVTAVDADQENRH*EQLSEH 10
           ++V  ++++L           L+  L  V   +   H   VD DQ+N H E  S H
Sbjct: 42  VQVQRDASKLNNQHARKKYWLLLWFLIVVWVMILTDHFFDVDGDQQNDHAESDSPH 97


>06_03_0667 - 23290585-23290962
          Length = 125

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 71  LLKSLVTTSNSMRISRSSGLTRGCAGKRVLSLSTLMVPPVLW 196
           LL ++V TS  + I+ SSG T     +   +   ++V  +LW
Sbjct: 44  LLGAIVLTSRQLIITTSSGATHSVDAELYHAYDVVLVAFLLW 85


>05_01_0162 -
           1095020-1095202,1096114-1096188,1096939-1097039,
           1097467-1097577,1097704-1097807,1098260-1098493,
           1098583-1099304
          Length = 509

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 168 DSESTRLPAHPRVSPLLRLIL--ILFDVVTRLFNKHVTAVD 52
           D    RLP +PRV  LL L L  IL+  V+  F  +   V+
Sbjct: 464 DGNCARLPVYPRVKTLLGLGLFSILYPWVSYWFKSYARWVN 504


>04_01_0046 +
           510721-510790,511048-511121,511459-511729,511865-512243,
           512550-512771,513130-513259,514311-514367,514756-515046
          Length = 497

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/49 (22%), Positives = 20/49 (40%)
 Frame = +2

Query: 71  LLKSLVTTSNSMRISRSSGLTRGCAGKRVLSLSTLMVPPVLWSSTHNWQ 217
           ++  L  T N   +  +S L   C  K +   S  M+  ++W     W+
Sbjct: 355 VMSLLSKTLNEFVVDGASPLGIDCTKKTIKEASRCMLQEIIWREEGQWE 403


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,431,154
Number of Sequences: 37544
Number of extensions: 81450
Number of successful extensions: 255
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)