Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_G23
         (220 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC013365-1|AAH13365.1|  704|Homo sapiens chromosome 20 open read...    27   8.2  
BC010005-1|AAH10005.1|  704|Homo sapiens chromosome 20 open read...    27   8.2  
AL162458-2|CAC10456.1|  704|Homo sapiens chromosome 20 open read...    27   8.2  
AB050014-1|BAC45238.1|  704|Homo sapiens posphorylated CTD inter...    27   8.2  

>BC013365-1|AAH13365.1|  704|Homo sapiens chromosome 20 open reading
           frame 67 protein.
          Length = 704

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = -2

Query: 207 WVLDHSTGGTIRVDSESTRLPAHPRVSPLLRLILIL 100
           W LD  T   I+    S  LP HP V  LLR  LIL
Sbjct: 176 WDLDIQTNAVIKHRGPSEVLPPHPEVE-LLRSQLIL 210


>BC010005-1|AAH10005.1|  704|Homo sapiens chromosome 20 open reading
           frame 67 protein.
          Length = 704

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = -2

Query: 207 WVLDHSTGGTIRVDSESTRLPAHPRVSPLLRLILIL 100
           W LD  T   I+    S  LP HP V  LLR  LIL
Sbjct: 176 WDLDIQTNAVIKHRGPSEVLPPHPEVE-LLRSQLIL 210


>AL162458-2|CAC10456.1|  704|Homo sapiens chromosome 20 open reading
           frame 67 protein.
          Length = 704

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = -2

Query: 207 WVLDHSTGGTIRVDSESTRLPAHPRVSPLLRLILIL 100
           W LD  T   I+    S  LP HP V  LLR  LIL
Sbjct: 176 WDLDIQTNAVIKHRGPSEVLPPHPEVE-LLRSQLIL 210


>AB050014-1|BAC45238.1|  704|Homo sapiens posphorylated CTD
           interacting factor PCIF1 protein.
          Length = 704

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = -2

Query: 207 WVLDHSTGGTIRVDSESTRLPAHPRVSPLLRLILIL 100
           W LD  T   I+    S  LP HP V  LLR  LIL
Sbjct: 176 WDLDIQTNAVIKHRGPSEVLPPHPEVE-LLRSQLIL 210


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,715,033
Number of Sequences: 237096
Number of extensions: 475027
Number of successful extensions: 1188
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 76,859,062
effective HSP length: 51
effective length of database: 64,767,166
effective search space used: 1360110486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)