Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_G23
         (220 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical pr...    31   0.084
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical...    30   0.26 
AF016425-6|AAY86242.1|  104|Caenorhabditis elegans Hypothetical ...    27   1.4  
U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical pr...    26   4.2  

>Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical
           protein R11H6.2 protein.
          Length = 442

 Score = 31.5 bits (68), Expect = 0.084
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 189 TGGTIRVDSESTRLPAHPRVSPLLRLILILFDVVTRLFNKHVTAVDADQE 40
           TGG  + DS  T LP H  +S L+ LI +++  +    N  +  +  D E
Sbjct: 301 TGGVTKDDSFVTPLPVHSLISLLIWLICLVYASIRNSSNTSLGKITGDNE 350


>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
           protein B0511.12 protein.
          Length = 1634

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 135 RVSPLLRLILILFDVVTRLFNKHVTAVDADQE 40
           R+S    L++ILFD++T  F KH+ +   D++
Sbjct: 416 RMSSNQNLMVILFDIITSPFRKHLDSEQEDED 447


>AF016425-6|AAY86242.1|  104|Caenorhabditis elegans Hypothetical
           protein F59A7.11 protein.
          Length = 104

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +1

Query: 28  LVSVLLVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTINSDGTS 186
           L++ LL  +    V+   PG   +  ED  +     R RR  G  T+ +DG++
Sbjct: 4   LINSLLFTIAILAVVWGYPGQQADHVEDLTKNRNEPRARRDLGTETVRADGSA 56


>U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical
           protein B0416.1 protein.
          Length = 1203

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 201 LDHSTGGTIRVDSESTRLPAHPRVSPLLRLILIL 100
           +DHSTG     DSEST     P++S   R ++ +
Sbjct: 887 VDHSTGEEQSSDSESTTSSLPPKLSLRQRFLVCI 920


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,419,863
Number of Sequences: 27780
Number of extensions: 64482
Number of successful extensions: 212
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 12,740,198
effective HSP length: 52
effective length of database: 11,295,638
effective search space used: 225912760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)