Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_G22
(301 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 25 1.8
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 25 3.1
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 24 4.2
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 24 4.2
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 24 4.2
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 24 5.5
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac... 24 5.5
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 24 5.5
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 23 7.3
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 23 7.3
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 23 9.6
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 25.4 bits (53), Expect = 1.8
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -1
Query: 205 SQEVLVSVVLISNICALCNLLLNSSDPHLNLIR 107
S+EVL+ ++ C L +++LN +N++R
Sbjct: 110 SEEVLLKEASYASYCGLSSIILNGPTSPMNVMR 142
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 24.6 bits (51), Expect = 3.1
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 7 AESVDKPDTSYQ-YQPLSIPAYNRFGGDPS 93
+E V D S + +QP+S+PA+ G + S
Sbjct: 134 SEKVTLKDLSLEPHQPVSLPAFENIGSETS 163
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 24.2 bits (50), Expect = 4.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 52 LSIPAYNRFGGDPSYSTNSVSGSS 123
L+IPA +RFG S S + +GSS
Sbjct: 5 LNIPALSRFGKSISASLHHQNGSS 28
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 24.2 bits (50), Expect = 4.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 8 RNLLINRILRTNTNHYLYQPIIDLAEILLTVLI 106
RNL + ILR NH LY I + +L VL+
Sbjct: 170 RNLPFSPILRQIYNHPLYNIFIFVVIVLHAVLL 202
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 24.2 bits (50), Expect = 4.2
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 163 CALCNLLLNSSDPHLNL 113
C +CN++L+ DP L+L
Sbjct: 110 CLVCNIILDIQDPLLSL 126
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 23.8 bits (49), Expect = 5.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 172 KSIQRRPVPPVKWPSSTPLTTPVVLIPGLYTYHL 273
+S ++RPV + P STP+ V IP L ++
Sbjct: 126 ESFRKRPVRTILHPFSTPIPHMVHGIPWLQDLYI 159
Score = 23.8 bits (49), Expect = 5.5
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +1
Query: 22 KPDTSYQYQPLSIPAYNRFGGDPSYSTN 105
+PD Y +P+ + A+ + DP S N
Sbjct: 673 RPDKVYAGKPVYVTAFRQLVNDPVLSAN 700
>SPAC11D3.03c |||meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 23.8 bits (49), Expect = 5.5
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 7 AESVDKPDTSYQYQPLSIPAYNRFGGDPSYS 99
A S KP+ + P +PAY G P Y+
Sbjct: 8 ASSSQKPEKTKYNLPKPLPAYYPHPGSPLYA 38
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 23.8 bits (49), Expect = 5.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 182 CIDFKYMCPV*PPFKLIRPALEPDTELV 99
CI + Y C PFK +R A E E +
Sbjct: 35 CIAYNYECTYGQPFKRLRHAPEKYIEFL 62
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 23.4 bits (48), Expect = 7.3
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = -1
Query: 262 YKVQELIRPVWSMALN*AISQEVLVSVVLISNICALCNLLLNSSD 128
+K+ L+ +WS L A ++E + L + IC + N+ +
Sbjct: 1270 FKLNHLVLELWSDVLTYAFNEEKTIRASLPTLICLSKKIFENAEN 1314
>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 220
Score = 23.4 bits (48), Expect = 7.3
Identities = 7/22 (31%), Positives = 12/22 (54%)
Frame = -2
Query: 108 GISTVRRISAKSIIGWYR*WLV 43
G + R K++ GWY+ W +
Sbjct: 179 GAGKIHREGLKAVRGWYKNWKI 200
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 23.0 bits (47), Expect = 9.6
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = +1
Query: 34 SYQ---YQPLSIPAYNRFGGDPSYSTNS 108
SYQ Y +SIP FGG PS N+
Sbjct: 213 SYQVGGYDGVSIPTPATFGGSPSGFVNA 240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.132 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,353,720
Number of Sequences: 5004
Number of extensions: 26458
Number of successful extensions: 50
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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