Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_G22
         (301 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016415-2|AAW88413.1|  296|Caenorhabditis elegans Serpentine re...    30   0.35 
AF022967-5|AAB69878.1|  537|Caenorhabditis elegans Hypothetical ...    27   3.3  
AC024877-12|AAF60902.1|  128|Caenorhabditis elegans Hypothetical...    27   3.3  
U22833-3|AAA64323.2|  387|Caenorhabditis elegans Hypothetical pr...    26   4.4  
AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe...    26   5.8  
Z82059-11|CAC42351.2|  591|Caenorhabditis elegans Hypothetical p...    25   7.6  
Z82059-10|CAB04878.2|  589|Caenorhabditis elegans Hypothetical p...    25   7.6  
Z75712-4|CAB00043.1|  694|Caenorhabditis elegans Hypothetical pr...    25   7.6  
AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl t...    25   7.6  

>AF016415-2|AAW88413.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 29 protein.
          Length = 296

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = -1

Query: 196 VLVSVVLISNICALCNLLLNSSDPHLNLIRN*YCKKDLRQIYYRLV 59
           +LV V++   +CA+ ++LLN +   + +++    K ++R  YYR V
Sbjct: 4   ILVLVLVTGIVCAIFDVLLNLNLVWIIVLKKSQRKPEMRLFYYRFV 49


>AF022967-5|AAB69878.1|  537|Caenorhabditis elegans Hypothetical
           protein C13A2.6 protein.
          Length = 537

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 172 KSIQRRPVPPVKWPSSTPLTTPVVLIPGLYTY 267
           ++I   P PPV  PSS PL    V I   Y Y
Sbjct: 68  ENITNSPSPPVYDPSSHPLPASHVYIVSAYYY 99


>AC024877-12|AAF60902.1|  128|Caenorhabditis elegans Hypothetical
           protein Y95B8A.2 protein.
          Length = 128

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/52 (25%), Positives = 21/52 (40%)
 Frame = +1

Query: 79  GGDPSYSTNSVSGSSAGLMSLKGGYTGHIYLKSIQRRPVPPVKWPSSTPLTT 234
           GG+P  +  ++ G         GG  G +   ++  +P P    P S P  T
Sbjct: 35  GGNPFANPQAIGGLFQQFAGGNGGGFGQLLAGAMAPKPAPAAAGPRSAPAPT 86


>U22833-3|AAA64323.2|  387|Caenorhabditis elegans Hypothetical
           protein W02B3.4 protein.
          Length = 387

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 236 GVVNGVELGHFTGGTGLRCIDFKYMCPV*PPF 141
           GV NG    H+ GG       +KY  PV  PF
Sbjct: 290 GVENGSVTHHWVGGVAPDGTKYKYSYPVYDPF 321


>AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform a protein.
          Length = 691

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 151 YTGHIYLKSIQRRPVPPVKWPSSTPLTTPVVLIPGLYTYHLE 276
           Y  H+   +IQR+P PPV+  +     +P  L P + T + E
Sbjct: 280 YYWHVDSGTIQRQPPPPVRDVTPARSPSPPPLPPPITTANRE 321


>Z82059-11|CAC42351.2|  591|Caenorhabditis elegans Hypothetical
           protein T27E9.4b protein.
          Length = 591

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 127 GLMSLKGGYTGHIYLKSIQRRPVPPVKWPSSTPL 228
           G + + GGY G  +LKS++       KW   +P+
Sbjct: 492 GKIYVAGGYDGTSFLKSVEVYDPVEKKWSPVSPM 525


>Z82059-10|CAB04878.2|  589|Caenorhabditis elegans Hypothetical
           protein T27E9.4a protein.
          Length = 589

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 127 GLMSLKGGYTGHIYLKSIQRRPVPPVKWPSSTPL 228
           G + + GGY G  +LKS++       KW   +P+
Sbjct: 490 GKIYVAGGYDGTSFLKSVEVYDPVEKKWSPVSPM 523


>Z75712-4|CAB00043.1|  694|Caenorhabditis elegans Hypothetical
           protein K04G2.6 protein.
          Length = 694

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 280 SLPNDMYKVQELIRPVWSMALN*AISQEVLVSVVLISNIC 161
           S+P  ++     I PV    L+    + +L+ + LISNIC
Sbjct: 371 SMPGQLFVHMHQIFPVLLNTLSDTSDEVLLLDLFLISNIC 410


>AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl trna
           synthetase protein2 protein.
          Length = 551

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 135 EFKRRLHRAHIFEINTTETSTSC 203
           E  RR+H  H +++   + STSC
Sbjct: 362 EILRRMHHLHQYDVLRCDRSTSC 384


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.311    0.132    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,371,164
Number of Sequences: 27780
Number of extensions: 144645
Number of successful extensions: 431
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)