Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_G19
(275 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 33 0.010
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy... 28 0.28
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce... 25 2.6
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 25 2.6
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 2.6
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 24 4.6
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 24 4.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 24 4.6
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 23 6.1
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 23 6.1
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 23 8.0
>SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 156
Score = 32.7 bits (71), Expect = 0.010
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 19 MFGKIVFLLLVALCVGVQSRYLIVSEPVYYIQHYEEPELLTSSRV 153
MFGK+ LL+ A + +Q + + P+ ++H E ELL ++RV
Sbjct: 1 MFGKVSSLLVFASFLIIQGAFATLVAPIGDLEHLSEIELLYTNRV 45
>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 194
Score = 27.9 bits (59), Expect = 0.28
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 20 CSGRSSFYCLSLCASAFKAD 79
C G SSFYCLS+ +K D
Sbjct: 132 CQGYSSFYCLSIFDRYYKPD 151
>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 324
Score = 24.6 bits (51), Expect = 2.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 10 YTNMFGKIVFLLLVALCVGVQSRYLIVSEPVYYI 111
+T++FG IVFL + + R +E VY I
Sbjct: 93 WTHLFGAIVFLFFIFKSELILKRDTTTAEDVYVI 126
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 24.6 bits (51), Expect = 2.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 236 SLPAKGTLTPAPEVPSELSVRAPCASLRTLELVNS 132
S+P G P VP + S +A SLRT ++ S
Sbjct: 210 SIPKVGETYNDPSVPKDFSRKAIHESLRTKNILQS 244
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 24.6 bits (51), Expect = 2.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 236 SLPAKGTLTPAPEVPSE 186
SLPA GT TP+P V +
Sbjct: 725 SLPAAGTATPSPVVSQQ 741
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 23.8 bits (49), Expect = 4.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 148 RVRRDAHGALTLNSDGTSGAGVKVPFAGNDKNI 246
R+ RD + N DGTSGA + F G K +
Sbjct: 442 RIVRDIADVIEDNMDGTSGALYAIFFHGFAKGM 474
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 23.8 bits (49), Expect = 4.6
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +1
Query: 34 VFLLLVALCVGVQSRYLIVSEPVYYI 111
+F++L+ LC + S ++V +Y+I
Sbjct: 639 MFIMLICLCYSIISPLILVFGLIYFI 664
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.8 bits (49), Expect = 4.6
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -1
Query: 260 PIALTIFLSLPAKGTLTPAPEVPSELSVRAPCASLRTL-ELVNSSG 126
PIA + +PA L PA P AP A + ++ EL G
Sbjct: 454 PIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELPQQDG 499
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 23.4 bits (48), Expect = 6.1
Identities = 7/25 (28%), Positives = 17/25 (68%)
Frame = -2
Query: 136 IVQAPHSVEYSKQVR*QSGIGFERR 62
++ APH + Y ++ ++G+ FE++
Sbjct: 142 LINAPHYLNYMYKLLIEAGVEFEKK 166
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 23.4 bits (48), Expect = 6.1
Identities = 7/11 (63%), Positives = 11/11 (100%)
Frame = +3
Query: 87 CQRTCLLYSTL 119
C+RTC+L++TL
Sbjct: 252 CKRTCILFATL 262
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 23.0 bits (47), Expect = 8.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -3
Query: 258 DSAYYILVVTSKGYFNSSTRGTIGVERESSVRVPADS 148
+ A+Y LV T + Y S +G + + +VPA +
Sbjct: 159 EEAFYSLVRTIRRYNKSEEKGFQNKQAVQTAQVPAST 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,029,514
Number of Sequences: 5004
Number of extensions: 16984
Number of successful extensions: 67
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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