Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_G17
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...    60   1e-10
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta...    26   2.0  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   4.7  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    25   4.7  
SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||...    25   6.1  

>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 60.5 bits (140), Expect = 1e-10
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
 Frame = +1

Query: 109 QKYPDRVPVIVEKAPKARLGDLDRRS-ISTIRLNCWSILLPD*KTYHLRPEDALFFFVNN 285
           +KYPDR+PVI EK  K+ +  +D++  +    L     +    K   L PE A+F F++ 
Sbjct: 23  EKYPDRIPVICEKVDKSDIAAIDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFIDE 82

Query: 286 VIPPTSATXGSLYQEH 333
           ++PPT+A   ++Y+EH
Sbjct: 83  ILPPTAALMSTIYEEH 98



 Score = 59.3 bits (137), Expect = 2e-10
 Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
 Frame = +2

Query: 47  MKFQYKEEHSFEKRKTE---VRNRRNIRIVFQ*L*RKPRRLDLET-STEEVLVPSDLTVG 214
           M+ Q+K++ SFEKRKTE   +R +   RI    +  K  + D+     ++ LVPSDLTVG
Sbjct: 1   MRSQFKDDFSFEKRKTESQRIREKYPDRIPV--ICEKVDKSDIAAIDKKKYLVPSDLTVG 58

Query: 215 QFYFLIRKRITFVPRTRFSFS*TM*FHQHLQLXVLSTRSITTKNFFLYIAFSDENVYG 388
           QF ++IRKRI   P                 L         +++ FLYI +S EN +G
Sbjct: 59  QFVYVIRKRIKLSPEKAIFIFIDEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFG 116


>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
           Taf4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 32  VKKTKMKFQYKEEHSFEKRKTEVRNRR 112
           V++T   F YKE  S E+R+T +  RR
Sbjct: 192 VRQTLANFAYKEYESEERRRTVLNIRR 218


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 32  VKKTKMKFQYKEEHSFEKRK 91
           +K+  +KFQ KE H F K++
Sbjct: 683 IKQGILKFQSKESHKFRKKE 702


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -2

Query: 204 KSDGTNTSSVEVSKSSLRGFLYNYWNTIRIFL 109
           K    NT S       L+GF   YW  + I+L
Sbjct: 116 KGSVINTISTLARSEGLKGFYRGYWMGVAIYL 147


>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 237

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 187 YFFCRGLQV*PSGLSLQLLEHDPDISAISHLR 92
           Y   +GL    S  + QL +H+PD   +S LR
Sbjct: 150 YLRLKGLMTIGSISNSQLSDHNPDFQVLSDLR 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,650,454
Number of Sequences: 5004
Number of extensions: 31511
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)