Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_G17
(415 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23511-11|AAC46797.1| 123|Caenorhabditis elegans Lc3, gabarap a... 93 5e-20
AF326943-1|AAG49393.1| 123|Caenorhabditis elegans GABA A recept... 93 5e-20
Z69385-5|CAA93421.1| 130|Caenorhabditis elegans Hypothetical pr... 31 0.25
U64847-8|AAQ91904.1| 558|Caenorhabditis elegans Acyltransferase... 28 2.3
U64847-7|AAB04876.1| 718|Caenorhabditis elegans Acyltransferase... 28 2.3
AF068709-9|AAC19248.1| 349|Caenorhabditis elegans Seven tm rece... 28 3.1
AC006645-11|AAF39850.1| 472|Caenorhabditis elegans Hypothetical... 28 3.1
Z69663-2|CAA93509.2| 819|Caenorhabditis elegans Hypothetical pr... 27 4.1
AC006677-4|AAF39949.1| 327|Caenorhabditis elegans Serpentine re... 26 9.4
>U23511-11|AAC46797.1| 123|Caenorhabditis elegans Lc3, gabarap and
gate-16 familyprotein 1 protein.
Length = 123
Score = 93.5 bits (222), Expect = 5e-20
Identities = 46/90 (51%), Positives = 62/90 (68%), Gaps = 3/90 (3%)
Frame = +1
Query: 85 KEDGGEKSQKYPDRVPVIVEKAPKARLGDLDRRSI---STIRLNCWSILLPD*KTYHLRP 255
+ +G + +KYPDR+PVIVEKAPK++L DLD++ S + + + L+ K LRP
Sbjct: 15 RAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQFYFLIR--KRIQLRP 72
Query: 256 EDALFFFVNNVIPPTSATXGSLYQEHHDXE 345
EDALFFFVNNVIP T T G LYQ+HH+ +
Sbjct: 73 EDALFFFVNNVIPQTMTTMGQLYQDHHEED 102
Score = 75.4 bits (177), Expect = 2e-14
Identities = 48/117 (41%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Frame = +2
Query: 47 MKFQYKEEHSFEKRKTE---VRNRRNIRIVFQ*L*RKPRRLDLETSTEEVLVPSDLTVGQ 217
MK+ YKEE++FEKR+ E +R + RI + + P+ + ++ LVPSDLTVGQ
Sbjct: 1 MKWAYKEENNFEKRRAEGDKIRRKYPDRIPVI-VEKAPKSKLHDLDKKKYLVPSDLTVGQ 59
Query: 218 FYFLIRKRITFVPRTRFSFS*TM*FHQHLQLXVLSTRSITTKNFFLYIAFSDENVYG 388
FYFLIRKRI P F Q + + ++ FLYIA+SDE+VYG
Sbjct: 60 FYFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116
>AF326943-1|AAG49393.1| 123|Caenorhabditis elegans GABA A
receptor-associated protein protein.
Length = 123
Score = 93.5 bits (222), Expect = 5e-20
Identities = 46/90 (51%), Positives = 62/90 (68%), Gaps = 3/90 (3%)
Frame = +1
Query: 85 KEDGGEKSQKYPDRVPVIVEKAPKARLGDLDRRSI---STIRLNCWSILLPD*KTYHLRP 255
+ +G + +KYPDR+PVIVEKAPK++L DLD++ S + + + L+ K LRP
Sbjct: 15 RAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQFYFLIR--KRIQLRP 72
Query: 256 EDALFFFVNNVIPPTSATXGSLYQEHHDXE 345
EDALFFFVNNVIP T T G LYQ+HH+ +
Sbjct: 73 EDALFFFVNNVIPQTMTTMGQLYQDHHEED 102
Score = 75.4 bits (177), Expect = 2e-14
Identities = 48/117 (41%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Frame = +2
Query: 47 MKFQYKEEHSFEKRKTE---VRNRRNIRIVFQ*L*RKPRRLDLETSTEEVLVPSDLTVGQ 217
MK+ YKEE++FEKR+ E +R + RI + + P+ + ++ LVPSDLTVGQ
Sbjct: 1 MKWAYKEENNFEKRRAEGDKIRRKYPDRIPVI-VEKAPKSKLHDLDKKKYLVPSDLTVGQ 59
Query: 218 FYFLIRKRITFVPRTRFSFS*TM*FHQHLQLXVLSTRSITTKNFFLYIAFSDENVYG 388
FYFLIRKRI P F Q + + ++ FLYIA+SDE+VYG
Sbjct: 60 FYFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116
>Z69385-5|CAA93421.1| 130|Caenorhabditis elegans Hypothetical
protein ZK593.6 protein.
Length = 130
Score = 31.5 bits (68), Expect = 0.25
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Frame = +1
Query: 64 RRTFF*EKEDGGEKSQKYPDRVPVIVEKAPKAR-LGDLDR-RSISTIRLNCWSILLPD*K 237
RR F ++D E + P++VPVI+E+ R L +DR + + + ++ +
Sbjct: 20 RRPFHERQKDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSIVRR 79
Query: 238 TYHLRPEDALFFFVN-NVIPPTSATXGSLYQEHHD 339
L P+ A F VN + S + +LY + D
Sbjct: 80 RLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERD 114
>U64847-8|AAQ91904.1| 558|Caenorhabditis elegans
Acyltransferase-like protein 6,isoform b protein.
Length = 558
Score = 28.3 bits (60), Expect = 2.3
Identities = 20/78 (25%), Positives = 33/78 (42%)
Frame = -3
Query: 332 CSW*REPIVADVGGITLFTKKKSASSGRR*YVF*SGSKIDQQLSRMVLILLLSRSPSLAF 153
C W E I+A+ G + + KK+ S Y F ++L V + SP +
Sbjct: 280 CEWLCEKIIAEGGDVVGYQSKKTKGSALVKYAF-------EKLESCVEVTDEYVSPKESH 332
Query: 152 GAFSTITGTRSGYFCDFS 99
+F T+ ++ C FS
Sbjct: 333 SSFITLAYNKNSVICRFS 350
>U64847-7|AAB04876.1| 718|Caenorhabditis elegans
Acyltransferase-like protein 6,isoform a protein.
Length = 718
Score = 28.3 bits (60), Expect = 2.3
Identities = 20/78 (25%), Positives = 33/78 (42%)
Frame = -3
Query: 332 CSW*REPIVADVGGITLFTKKKSASSGRR*YVF*SGSKIDQQLSRMVLILLLSRSPSLAF 153
C W E I+A+ G + + KK+ S Y F ++L V + SP +
Sbjct: 440 CEWLCEKIIAEGGDVVGYQSKKTKGSALVKYAF-------EKLESCVEVTDEYVSPKESH 492
Query: 152 GAFSTITGTRSGYFCDFS 99
+F T+ ++ C FS
Sbjct: 493 SSFITLAYNKNSVICRFS 510
>AF068709-9|AAC19248.1| 349|Caenorhabditis elegans Seven tm
receptor protein 13 protein.
Length = 349
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 147 FLYNYWNTIRIFLRFLTSVFLFSKECSSLYWNFIFVFF 34
F+Y YW F T+ + + C+SL+W F FF
Sbjct: 116 FIYRYWAV------FDTNKLAYFEGCNSLFWFFYCAFF 147
>AC006645-11|AAF39850.1| 472|Caenorhabditis elegans Hypothetical
protein F56A4.12 protein.
Length = 472
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 135 YWNTIRIFLRFLTSVFLFSKECSSLYWNFIFVFFTQ*FDKET 10
+WN R+++ LT L + ++L +NF V +T F++ T
Sbjct: 47 FWNRTRLYIMVLTLACLTFIQMNTLTFNFT-VIYTHWFERNT 87
>Z69663-2|CAA93509.2| 819|Caenorhabditis elegans Hypothetical
protein K02B9.2 protein.
Length = 819
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -2
Query: 195 GTNTSSVEVSKSS--LRGFLYNYWNTI 121
GT+TS V K S L+ LY+YW T+
Sbjct: 684 GTSTSETPVLKFSITLKAMLYDYWRTM 710
>AC006677-4|AAF39949.1| 327|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 58 protein.
Length = 327
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 102 LTSVFLFSKECSSLYWNFIFVFF 34
+TSV+L + YWN IF+FF
Sbjct: 131 ITSVYLHMN--NDKYWNLIFIFF 151
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,106,459
Number of Sequences: 27780
Number of extensions: 175927
Number of successful extensions: 631
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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