Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_G16
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    27   2.3  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.3  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    26   4.0  
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    25   5.3  
SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyce...    25   7.0  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   7.0  
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb...    25   7.0  

>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 399 NHTICSNIAKYKPLENGSTFNSRI*NIHNTF 491
           N  IC  I   +PLE+G   N  +   HN F
Sbjct: 187 NEIICHGIPDQRPLEDGDIVNIDVSLYHNGF 217


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -3

Query: 411 KSCDCRLLLCTYKNSYARSLIINKVQNCFLNDSNIVFKLNTEIILWHTCY 262
           K  +C  LL   K +  RSL+  +  +C L++++ +  LN  + LW  CY
Sbjct: 74  KHIEC--LLVDSKITKTRSLL-KRFGSC-LDETSTIVLLNQSVSLWEDCY 119


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 31  YCLNLFIDYLHNTKKNYFKKPK 96
           Y L+ F  Y  N KKNYF K K
Sbjct: 350 YTLSNFEKYCDNFKKNYFSKFK 371


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 360 LHRSFCRCKEEVYNHTICSNIAKYKPLE 443
           L+ S   C +     T+CS + KY PLE
Sbjct: 301 LYVSTIHCGDAEGPRTVCSGLVKYIPLE 328


>SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
 Frame = -3

Query: 390 LLCTYKNSYARSLIINKV--QNCFL---NDSNI 307
           L CT+K +YA   I+ +V    C+L   ND N+
Sbjct: 130 LPCTHKGTYADDCIVQRVMQHKCYLVATNDKNL 162


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 405 TICSNIAKYKPLENGSTFNSRI*NIHNTF 491
           T C N  K  P   G+ F+S   N+ N+F
Sbjct: 119 TFCDNSGKGSPATFGNEFHSAFNNLVNSF 147


>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 209

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 52  DYLHNTKKNYFKKPKVK 102
           D+LH TKKN  KK   K
Sbjct: 188 DFLHKTKKNNLKKKNKK 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,868,009
Number of Sequences: 5004
Number of extensions: 36051
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)