Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_G16
         (527 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0367 - 20672776-20673550,20674097-20674320,20674626-206748...    31   0.57 
07_01_0022 - 146406-146498,146616-146693,146967-147020,147729-14...    27   7.1  
05_06_0223 - 26525618-26526112,26526203-26526370,26526649-265274...    27   7.1  

>05_04_0367 -
           20672776-20673550,20674097-20674320,20674626-20674843,
           20675133-20676534
          Length = 872

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = -3

Query: 318 DSNIVFKLNTEIILWHTCYFNYIISKKEFLNS 223
           +S I  +L  E++ W +C+ N+I+S+K ++ +
Sbjct: 651 NSKITLELEMELLNWCSCFSNWILSQKAYIET 682


>07_01_0022 -
           146406-146498,146616-146693,146967-147020,147729-147792,
           147900-148018,148207-148278,148544-148596,148746-148836,
           148956-149099
          Length = 255

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 274 AYLLFQLYYQQKRVP*FYWKVKCLEHLISYL 182
           A  L QL   Q+RVP F W  + + HL+++L
Sbjct: 45  AVALIQLIRIQRRVPEFGWTTQKVFHLMNFL 75


>05_06_0223 -
           26525618-26526112,26526203-26526370,26526649-26527473,
           26527898-26528004,26529701-26529767
          Length = 553

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 223 YWKVKCLEHLISYLNVKICN 164
           Y K+ CL   +SYLNV +C+
Sbjct: 245 YLKIPCLLEQLSYLNVDLCH 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,091,972
Number of Sequences: 37544
Number of extensions: 170625
Number of successful extensions: 256
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)