Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_G13
(604 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0649 - 18402976-18403220,18403305-18404499 46 2e-05
11_04_0234 + 15187065-15188241,15188316-15188494 42 5e-04
10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376 29 2.1
03_05_1021 - 29750155-29750220,29750342-29750428,29750614-297507... 29 2.8
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272... 29 3.7
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 28 5.0
12_02_0292 + 16979550-16980662,16983249-16983731 27 8.7
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278... 27 8.7
05_03_0191 - 9521496-9521921 27 8.7
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 46.0 bits (104), Expect = 2e-05
Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 1/186 (0%)
Frame = +1
Query: 7 SIINLVDIVNIQAFDYYTP-ERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTH 183
++ +D VN+ AF P N + AP+Y +R +A + W+ G P
Sbjct: 220 TVARSLDWVNVMAFGLRPPGAANANATAFDAPLY---DRASHYSASYGVVSWLDAGVPAS 276
Query: 184 KLVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQGLLSYPEICAKLINPNQN 363
K+V+GI GR+W L + + P+ A + G + G +SY E+ L
Sbjct: 277 KVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRG--SNATGAMSYAEV-QWLAATATR 333
Query: 364 GKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSYEDPDTAGNKASYVKTKNLGGVSIM 543
G R + ++ S +Y G WV+++ K ++ L G +
Sbjct: 334 GSRAVITAYDNAS--VASYV-------SVGDVWVAFDGVAVVAEKLAFAARCGLLGYFLW 384
Query: 544 DLSMDD 561
++ DD
Sbjct: 385 PVNYDD 390
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 41.5 bits (93), Expect = 5e-04
Identities = 49/181 (27%), Positives = 74/181 (40%), Gaps = 1/181 (0%)
Frame = +1
Query: 22 VDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGI 201
+D VNI F + N AD AP+Y ++D +A + W+ G P KLV+GI
Sbjct: 228 LDWVNIITFSLHK-NSNVTTAD--APLY---DKDSHFSASYGVISWLDAGLPPCKLVMGI 281
Query: 202 STTGRTWKL-DSDSEISGVPPIHADEGGEAGPYTKVQGLLSYPEICAKLINPNQNGKRPH 378
GR+W L + D G P A G + G+++Y EI L K
Sbjct: 282 PLFGRSWFLRNKDKNGLGAPTAAA---GTKQRKSNQIGVIAYAEIEEYL-------KSQS 331
Query: 379 LRKVNDPSKRFGTYAFRLPDDNGEGGFWVSYEDPDTAGNKASYVKTKNLGGVSIMDLSMD 558
+ +D ++ Y + G WVS++ K +V L G + +S D
Sbjct: 332 VFVTHD-NQSVADYFY-------SGDLWVSFDSAVVVQEKVEFVAKSQLLGYFLSTISFD 383
Query: 559 D 561
D
Sbjct: 384 D 384
>10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376
Length = 746
Score = 29.5 bits (63), Expect = 2.1
Identities = 23/93 (24%), Positives = 37/93 (39%)
Frame = +1
Query: 133 NADAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQG 312
N + +IN+W+ T G + + S + G A E G GP ++
Sbjct: 508 NGNGSINWWVNGARSTRDWASGEFVPKSSGAVSSTPSMRGTVCYVAPEYGGGGPLSERCD 567
Query: 313 LLSYPEICAKLINPNQNGKRPHLRKVNDPSKRF 411
+ SY + LI +G+RP L+ P F
Sbjct: 568 IYSYGVLLLVLI----SGRRP-LQVTASPMSEF 595
>03_05_1021 -
29750155-29750220,29750342-29750428,29750614-29750799,
29750965-29751059,29751179-29751284,29751378-29751452,
29751548-29751679,29751782-29751961,29752371-29752567,
29752651-29752906
Length = 459
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 187 LVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQGLLSYPEICAK 342
LV+G + T L E+SG+P D GP K+ L++ E+ K
Sbjct: 365 LVVGGWNSSNTSHLQEIGELSGIPSYWIDSEQRIGPGNKISYKLNHGELVEK 416
>07_01_0365 +
2718707-2718839,2719335-2719405,2719512-2719955,
2720660-2721802
Length = 596
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 122 ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 232
++Y +PT++ + GF + LSLV+A L+ GS +
Sbjct: 293 VMYYSPTIVQLAGFASNQTALALSLVTAGLNAAGSLV 329
>02_03_0074 +
14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 469 KKPRSHLHHYHQEGGRHR 416
++P+SH HH+H G R R
Sbjct: 164 QQPQSHHHHHHHSGSRKR 181
>12_02_0292 + 16979550-16980662,16983249-16983731
Length = 531
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 180 PQTCPWYQHHWTYVEARFR 236
P+ W QHHWT R R
Sbjct: 505 PEAKSWRQHHWTPARTRLR 523
>08_02_0969 -
23126389-23126670,23126764-23126947,23127017-23127834,
23127953-23128642
Length = 657
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 539 MDTPPRFFVFT*LALFPAVSGSS*ETQKPPSPLSSGRRKA 420
M T P +A A GS +T PPSP GRR++
Sbjct: 542 MMTVPNLGTLDPMADADANDGSQMQTPAPPSPAGEGRRRS 581
>05_03_0191 - 9521496-9521921
Length = 141
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 168 WCAYPQTCPWYQHHWTYVEARFR 236
W P+ W++ HWT AR R
Sbjct: 119 WQRRPEAEKWWRRHWTPARARLR 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.137 0.423
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,822,012
Number of Sequences: 37544
Number of extensions: 432597
Number of successful extensions: 940
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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