Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_G09
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    34   0.011
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    34   0.015
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    33   0.019
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    28   0.72 
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    26   3.8  
SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   8.9  

>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 34.3 bits (75), Expect = 0.011
 Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +2

Query: 8   LNPQHTVPILVD---NDFCVAESRVIIRYLASKYG-ENSNLYPEDLQARAKVDYILDF 169
           LNP   VP L+D   ND+ + ES  I+ YLA KY  E     P D     KV   L F
Sbjct: 49  LNPNGRVPTLIDHHNNDYTIWESDAILIYLADKYDTERKISLPRDHPEYYKVIQYLFF 106


>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 33.9 bits (74), Expect = 0.015
 Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +2

Query: 8   LNPQHTVPILVD---NDFCVAESRVIIRYLASKY 100
           LNP   VP LVD   ND+ + ES  I+ YLA KY
Sbjct: 49  LNPNGRVPTLVDHKNNDYTIWESDAILIYLADKY 82


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 33.5 bits (73), Expect = 0.019
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +2

Query: 8   LNPQHTVPILVDNDFCVAESRVIIRYLASKYGENSNLYPEDLQARAKVDYILDFDLGSL 184
           L+P    PI+VD+     ES  I+ +L  KYG +     ED+    K +  + F   SL
Sbjct: 45  LSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEEDVAELEKYELWMHFSEASL 103


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +3

Query: 219 YMAVLHRPMLGSRSYNINSKS*IV 290
           Y A++++PMLG+R +N +SK  IV
Sbjct: 42  YHAIVNQPMLGARIHNCHSKIPIV 65


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 120 YRLLFSPYLLAKYLMITRDSATQKSLSTRIGTVCCGLRC 4
           Y +L S        M+ +DS  +KS    +GT+ C   C
Sbjct: 391 YAILQSQVETGNPFMLYKDSCNRKSNQKNVGTIRCSNLC 429


>SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 90

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +3

Query: 330 VSPISLYSPVSPLWTLLISASRIIQMS 410
           +SP+S+ SPV  ++ ++ S + ++ MS
Sbjct: 22  LSPVSILSPVLLIYLVIHSQNELVSMS 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,114,143
Number of Sequences: 5004
Number of extensions: 40358
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)