Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_G09
         (515 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   10.0 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   10.0 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   10.0 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   10.0 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   10.0 

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 153 TTYLTSTWDHCFRNLKIIITRKYMAVLHRP 242
           T Y T+ W     N  +  T   +AVL+RP
Sbjct: 123 TFYKTAAWARLRMNSGMFTTAFSIAVLYRP 152


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 153 TTYLTSTWDHCFRNLKIIITRKYMAVLHRP 242
           T Y T+ W     N  +  T   +AVL+RP
Sbjct: 123 TFYKTAAWARLRMNSGMFTTAFSIAVLYRP 152


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 12/50 (24%), Positives = 19/50 (38%)
 Frame = +2

Query: 257 KLQHKLEILNSILEGKTYAAGSEXXXXXXXXXXXXXTMDASDISFKDHPN 406
           +L+  +EI N  L   TY+                  M+  ++S   HPN
Sbjct: 355 RLRWMMEIPNVTLPTSTYSGSPTELPKHLPTSLTKSKMEVMELSDLHHPN 404


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 159 YLTSTWDHCFRNLKIIITRKYMAVLHRP 242
           Y T+ W     N ++ +    +AV+HRP
Sbjct: 123 YNTAVWARFNVNEQMYLYALSVAVIHRP 150


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 348 KEISAILSSEPAAYVLPSRILFRISSLCCNFL 253
           K+I+ +    P+     SRI+F +  +C N +
Sbjct: 391 KDINKLYGMTPSDIDKYSRIVFPVCFVCFNLM 422


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 348 KEISAILSSEPAAYVLPSRILFRISSLCCNFL 253
           K+I+ +    P+     SRI+F +  +C N +
Sbjct: 391 KDINKLYGMTPSDIDKYSRIVFPVCFVCFNLM 422


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 159 YLTSTWDHCFRNLKIIITRKYMAVLHRP 242
           Y T+ W     N ++ +    +AV+HRP
Sbjct: 123 YNTAVWARFNVNEQMYLYALSVAVIHRP 150


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 348 KEISAILSSEPAAYVLPSRILFRISSLCCNFL 253
           K+I+ +    P+     SRI+F +  +C N +
Sbjct: 329 KDINKLYGMTPSDIDKYSRIVFPVCFVCFNLM 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,005
Number of Sequences: 438
Number of extensions: 2760
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)