Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_G08
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    25   5.6  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   7.4  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   7.4  

>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
 Frame = -2

Query: 308 HVPQQLQQTHLHVNVGVTLPFFLNSNYAFLYRQRRRVAITITD--IHIFDILSILSLLMR 135
           ++  + QQT    NV   L   LNS      +      +++ D     FD+  +  +   
Sbjct: 261 NISSKEQQTQKFANV--LLQIILNSRKNLSLQNYVGFFVSVLDALFECFDVPVVQYMYQE 318

Query: 134 YSFGICKVHSDHMK 93
              GIC  H +H K
Sbjct: 319 NIIGICNEHFEHFK 332


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 344 HTCVYTTKGIQLHVPQQLQQTHLH 273
           HT  Y ++  Q  VP+ L+++H++
Sbjct: 499 HTSAYESRAPQSKVPENLKESHVN 522


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 344  HTCVYTTKGIQLHVPQQLQQTHLHVNVGVTLPF 246
            H+ +    G+ L  P+ LQQ     N+G+ LP+
Sbjct: 2260 HSWIICVFGVGLGAPRWLQQFWATSNIGLYLPW 2292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,948
Number of Sequences: 5004
Number of extensions: 31627
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)