Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_G07
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine re...    29   2.8  
AF025458-2|AAB70978.1|  557|Caenorhabditis elegans Hypothetical ...    28   3.7  

>AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 23 protein.
          Length = 293

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -1

Query: 235 IVFYNKLFHFNHKMLLFNSI*VDIIYLYNSIEYDKKIFLANWLLT 101
           +  +  +F+ NH+ L+ NS+ + +I+ Y   +Y    +  N+ LT
Sbjct: 110 MAIFTPIFYRNHRSLVTNSVILCLIFGYAIFQYSFIYYFCNFELT 154


>AF025458-2|AAB70978.1|  557|Caenorhabditis elegans Hypothetical
           protein C01B12.5 protein.
          Length = 557

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 362 KKIFSHRKYWILCYFLKSLYFNLFLNQ 282
           K I+S    W+LCY + S+ + + LN+
Sbjct: 30  KSIWSELLIWLLCYSILSVIYRILLNK 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,485,199
Number of Sequences: 27780
Number of extensions: 165766
Number of successful extensions: 303
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)