Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_G06
(192 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0997 + 7884974-7885043,7885689-7885975,7886056-7886311,788... 50 3e-07
11_06_0689 - 26294961-26294976,26295271-26295414,26295506-262959... 44 2e-05
04_04_0179 - 23342764-23342973,23343185-23343340,23343535-233435... 38 9e-04
03_02_0712 - 10600147-10600196,10600257-10600378,10600993-106014... 38 0.001
02_05_0540 + 29852109-29852195,29852304-29852477,29852585-298528... 28 1.2
02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866... 27 1.6
01_05_0108 + 18183250-18183336,18183451-18183962,18184074-181842... 26 3.7
05_06_0116 - 25719030-25719458,25720138-25720301,25720390-257206... 26 4.9
03_02_0069 + 5401789-5401965,5403514-5403568,5403674-5405649,540... 26 4.9
>01_01_0997 +
7884974-7885043,7885689-7885975,7886056-7886311,
7886455-7886537,7886634-7886687,7887941-7888012,
7889093-7889155,7889274-7889324,7889432-7889513,
7889606-7889701,7889774-7889944,7890024-7890130,
7890229-7890326,7890798-7891048,7891235-7891398,
7891689-7891979,7892067-7892377,7892477-7892655,
7893231-7893301
Length = 918
Score = 49.6 bits (113), Expect = 3e-07
Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 4/49 (8%)
Frame = +3
Query: 6 EAQKWIEAVIG----ERFPSDLPYELPLRNGIILCKLMNRLQPGLISKV 140
+A W+E+VIG R PS+ + +RNGI+LCK +N++QPG + KV
Sbjct: 29 QAATWLESVIGPFGLSRCPSEQEFVAAVRNGIVLCKAINKIQPGAVPKV 77
>11_06_0689 -
26294961-26294976,26295271-26295414,26295506-26295909,
26296112-26296261,26296334-26296497,26296526-26296836,
26296948-26297084,26297276-26297416,26297821-26297867,
26297977-26298072,26298168-26298249,26298332-26298472,
26298607-26298702,26298809-26298877,26298959-26299030,
26299201-26299368,26299577-26299711,26299792-26299958,
26301213-26301369
Length = 898
Score = 43.6 bits (98), Expect = 2e-05
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Frame = +3
Query: 6 EAQKWIEAVIG-------ERFPSDLPYELPLRNGIILCKLMNRLQPGLISKV 140
EA W+ V+G PS+ + L LRNGI+LC +N++QPG + KV
Sbjct: 58 EAANWLRRVVGVVCGKDLAEEPSEEEFRLGLRNGIVLCNALNKVQPGSVPKV 109
>04_04_0179 -
23342764-23342973,23343185-23343340,23343535-23343593,
23344150-23344226,23344309-23344587,23344800-23344885,
23344960-23345027,23345721-23345904,23346071-23346204,
23346776-23347039,23347613-23347677,23347833-23348407,
23348501-23348680,23348765-23348928,23349008-23349261,
23349405-23349562,23349808-23349948,23350176-23350282,
23350651-23350737,23350812-23350901,23350974-23351055,
23351370-23351561,23351748-23351816,23351959-23352294,
23352694-23352837,23352963-23353126,23353817-23353883
Length = 1463
Score = 38.3 bits (85), Expect = 9e-04
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Frame = +3
Query: 6 EAQKWI---EAVIGERFP---SDLPYELPLRNGIILCKLMNRLQPGLISKV 140
EA +W+ EA E P S+ + + LRNG++LC ++N + PG + KV
Sbjct: 28 EAARWLRQMEAAAAESLPERPSEEEFCVALRNGLVLCNVLNHVNPGAVPKV 78
>03_02_0712 -
10600147-10600196,10600257-10600378,10600993-10601489,
10601663-10601851,10601936-10602099,10602193-10602446,
10602535-10602691,10602830-10602995,10603121-10603227,
10603305-10603478,10603594-10603689,10603781-10603862,
10603948-10604058,10604253-10604309,10604638-10604709,
10604799-10605041,10605195-10605341,10605381-10605616,
10605745-10605865
Length = 1014
Score = 37.5 bits (83), Expect = 0.001
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Frame = +3
Query: 6 EAQKWIEAVIGERFPSDLPYE-------LPLRNGIILCKLMNRLQPGLISK 137
EA W+ +G DLP E L LRNG ILC +NR+ PG + K
Sbjct: 46 EAAGWLRRTVGAVAARDLPEEPSEEEFRLGLRNGQILCGALNRVHPGAVPK 96
>02_05_0540 +
29852109-29852195,29852304-29852477,29852585-29852841,
29852954-29853125,29853513-29853551,29853647-29853715,
29853795-29853911,29854190-29854401,29854578-29854736,
29854810-29855009,29855100-29855266,29855346-29855442,
29855560-29855651,29855861-29856139
Length = 706
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 75 LRNGIILCKLMNRLQPGLISK 137
+R+G++LCKL+N PG I +
Sbjct: 166 VRDGVLLCKLINLAVPGTIDE 186
>02_04_0414 -
22685981-22686178,22686374-22686465,22686580-22686676,
22686801-22686916,22687314-22687513,22687588-22687740,
22687960-22688171,22688403-22688519,22688613-22688687,
22688815-22688853,22689518-22689689,22689809-22690056,
22690151-22690324,22690418-22690504
Length = 659
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 75 LRNGIILCKLMNRLQPGLISK 137
+R+G++LCKL+N PG I +
Sbjct: 163 VRDGVLLCKLINVAVPGTIDE 183
>01_05_0108 +
18183250-18183336,18183451-18183962,18184074-18184245,
18184984-18185022,18185117-18185185,18185281-18185397,
18185842-18186056,18187085-18187240,18187328-18187527,
18187927-18188084,18188321-18188417,18188738-18188829,
18189018-18189191
Length = 695
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 78 RNGIILCKLMNRLQPGLISK 137
++G++LCKL+N PG I +
Sbjct: 194 KDGVLLCKLINLAVPGTIDE 213
>05_06_0116 -
25719030-25719458,25720138-25720301,25720390-25720643,
25720727-25720782,25721032-25721169,25721315-25721421,
25721502-25721681,25721757-25721852,25721926-25722007,
25722084-25722425,25722666-25722695,25722788-25722880,
25722963-25723040,25723122-25723222,25723833-25724058,
25724647-25724760,25724855-25725009,25725515-25725554
Length = 894
Score = 25.8 bits (54), Expect = 4.9
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +3
Query: 6 EAQKWIEAVIGER-FP---SDLPYELPLRNGIILCKLMNRLQPGLISKVNVSGGDYXYMD 173
E +W+ A++ E P SD L +G +LC ++N L PG++ + S G Y D
Sbjct: 19 EVIEWLNALLPEYCLPLDSSDDELRELLSDGTVLCHIVNALIPGVLEE---SWGAYASSD 75
>03_02_0069 + 5401789-5401965,5403514-5403568,5403674-5405649,
5405710-5405868,5406081-5406252,5406617-5406915,
5407147-5407392
Length = 1027
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 3 QEAQKWIEAVIGERFPSDLPYELPLRNGIILCKLMNRLQPGLISKVNVSGG 155
Q KW+ + GE SDL + N + C++ N + + ++NV G
Sbjct: 916 QTEGKWLFGLKGEN--SDLVLNTLIFNCFVFCQVFNEVSSREMERINVFEG 964
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,341,183
Number of Sequences: 37544
Number of extensions: 79655
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 14,793,348
effective HSP length: 43
effective length of database: 13,178,956
effective search space used: 263579120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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