Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_G05
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.7  
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch...    25   5.7  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   5.7  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    25   5.7  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    24   10.0 

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 68  RVEKPNTS*PGPGIEPE 18
           R+EK NTS   PG+ PE
Sbjct: 751 RIEKTNTSPQEPGVVPE 767


>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 469

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 385 WKGLKSGIYTCLINWK 338
           W GLK  I T +I+WK
Sbjct: 416 WDGLKKNIKTPVIHWK 431


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 63  YSISSRSLEFVPYMATGSPPVTSGTELS 146
           +  SS+S E+  Y  TG+ P  S TEL+
Sbjct: 83  FKTSSKSDEYDSYPRTGNVPTFSFTELN 110


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 148 RRNAGGVVRYFTSA*PFGDNRRELMSCYIY 237
           ++N+  V+R FT++ PF     E +SC ++
Sbjct: 348 QKNSNRVIRSFTASDPFMIGDTEWISCKVH 377


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 384 GKG*KVGFILVL*IGKCV*YFVTCKP 307
           G G +  +IL+L +G C+  F+  KP
Sbjct: 218 GSGVRAVYILLLALGWCLFLFIAIKP 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,756,516
Number of Sequences: 5004
Number of extensions: 33991
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)