Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_G05
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0671 - 27157692-27158620,27158711-27158828,27158967-271591...    30   0.59 
05_01_0242 + 1804183-1806096                                           29   1.4  
07_03_0831 - 21810002-21810319,21810423-21810573,21810660-218108...    27   5.5  
10_01_0136 - 1639780-1639901,1640038-1640093,1641958-1642061,164...    27   7.2  
01_06_0546 + 30124693-30124970,30125711-30125861,30125955-301261...    27   7.2  
06_01_0780 + 5824367-5825335                                           26   9.5  
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498...    26   9.5  

>04_04_0671 -
           27157692-27158620,27158711-27158828,27158967-27159156,
           27159281-27159415,27159537-27159634,27160034-27160206,
           27160299-27160772,27161464-27161518
          Length = 723

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 38  RVNWYWVFLLYII-PEFGICALYGDRLAPCHIWDGTKLGEMRVV*FA 175
           +V WY+V + Y++ P  G C  YG  L   ++  G   G++ +  FA
Sbjct: 463 QVKWYYVIIAYLLAPALGFCNAYGTGLTDMNM--GYNYGKIALFIFA 507


>05_01_0242 + 1804183-1806096
          Length = 637

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 61 KNPIPVDPARGSNPRPQNGS 2
          +N IP DP+R   PRP  GS
Sbjct: 28 RNKIPADPSRTERPRPDPGS 47


>07_03_0831 -
           21810002-21810319,21810423-21810573,21810660-21810897,
           21811011-21811221,21811336-21811559,21811696-21811806,
           21813265-21813636,21813810-21814782
          Length = 865

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +3

Query: 33  RAGSTGIGFFYSISSRSLEFVPYMATGSPPVTSGTELSSAKCGWCSSLFHLCLTLRG*QA 212
           R+G    G F  I  R+L    +   G PP  +G ++S A   + SSL+   L   G + 
Sbjct: 220 RSGQWASGNFVGIPWRALYVYGFKLNGDPPPIAG-DMSIAFTPFNSSLYRFVLRPNGVET 278

Query: 213 *AYVML 230
             Y++L
Sbjct: 279 -CYMLL 283


>10_01_0136 -
           1639780-1639901,1640038-1640093,1641958-1642061,
           1642119-1642301,1642963-1643073,1643175-1643330,
           1644627-1644866,1646496-1646603,1646764-1647903
          Length = 739

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 84  LEFVPYMATGSPPVTSGTELSSAKCGWCSS 173
           L  +P++A  +P    GT+L S    WC S
Sbjct: 655 LRAMPHLALTNPNEKRGTQLGSTVFTWCGS 684


>01_06_0546 +
           30124693-30124970,30125711-30125861,30125955-30126137,
           30126333-30126407,30126535-30126690,30126909-30127007,
           30127075-30127205,30127690-30127771,30127846-30128199
          Length = 502

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 249 YHNFFNSTMMMTISSIINQKVCMLQNIKHI 338
           Y+ FF+  M  T+S ++ Q++     IKH+
Sbjct: 446 YYTFFSQCMESTLSDMLGQELAPSVMIKHV 475


>06_01_0780 + 5824367-5825335
          Length = 322

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 173 AISPLPNPSGITGVSLCH 226
           A +PLP  +GITGV L H
Sbjct: 183 AAAPLPGGAGITGVLLMH 200


>03_05_0642 -
           26346260-26346367,26347902-26348162,26348542-26349849,
           26349960-26350178,26350241-26350300,26352159-26352215,
           26352945-26353029,26353486-26353843,26353931-26355170
          Length = 1231

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 84  LEFVPYMATGSPPVTSGTELSSAKC 158
           ++F P++  GSP  TS +  S A+C
Sbjct: 1   MDFNPFLREGSPSETSSSLTSEAEC 25


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,396,352
Number of Sequences: 37544
Number of extensions: 227453
Number of successful extensions: 528
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)