Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_G05
         (399 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC113614-1|AAI13615.1| 1508|Homo sapiens gem (nuclear organelle)...    29   4.3  
BC036894-1|AAH36894.1|  746|Homo sapiens GEMIN5 protein protein.       29   4.3  
AY063750-1|AAL38980.1| 1508|Homo sapiens WD repeat protein Gemin...    29   4.3  
AK074066-1|BAB84892.1| 1512|Homo sapiens FLJ00137 protein protein.     29   4.3  
AK022748-1|BAB14222.1|  741|Homo sapiens protein ( Homo sapiens ...    29   4.3  

>BC113614-1|AAI13615.1| 1508|Homo sapiens gem (nuclear organelle)
           associated protein 5 protein.
          Length = 1508

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 16  VSGSIPGPGQLVLGFSTLYHPGVWNLC 96
           V G + G  + V GF+  +HPG +NLC
Sbjct: 56  VIGELVGHTERVSGFTFSHHPGQYNLC 82


>BC036894-1|AAH36894.1|  746|Homo sapiens GEMIN5 protein protein.
          Length = 746

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 16  VSGSIPGPGQLVLGFSTLYHPGVWNLC 96
           V G + G  + V GF+  +HPG +NLC
Sbjct: 56  VIGELVGHTERVSGFTFSHHPGQYNLC 82


>AY063750-1|AAL38980.1| 1508|Homo sapiens WD repeat protein Gemin5
           protein.
          Length = 1508

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 16  VSGSIPGPGQLVLGFSTLYHPGVWNLC 96
           V G + G  + V GF+  +HPG +NLC
Sbjct: 56  VIGELVGHTERVSGFTFSHHPGQYNLC 82


>AK074066-1|BAB84892.1| 1512|Homo sapiens FLJ00137 protein protein.
          Length = 1512

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 16  VSGSIPGPGQLVLGFSTLYHPGVWNLC 96
           V G + G  + V GF+  +HPG +NLC
Sbjct: 60  VIGELVGHTERVSGFTFSHHPGQYNLC 86


>AK022748-1|BAB14222.1|  741|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12686 fis, clone NT2RM4002527, weakly similar to
           VEGETATIBLE INCOMPATIBILITY PROTEIN HET-E-1. ).
          Length = 741

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 16  VSGSIPGPGQLVLGFSTLYHPGVWNLC 96
           V G + G  + V GF+  +HPG +NLC
Sbjct: 56  VIGELVGHTERVSGFTFSHHPGQYNLC 82


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,364,180
Number of Sequences: 237096
Number of extensions: 1440827
Number of successful extensions: 2428
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2428
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)