Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_G05
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022985-16|AAV28323.1|  307|Caenorhabditis elegans Hypothetical...    29   1.2  
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass...    27   6.5  
Z54216-4|CAA90947.1|  421|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AL132860-1|CAB60513.2|  616|Caenorhabditis elegans Hypothetical ...    26   8.7  

>AF022985-16|AAV28323.1|  307|Caenorhabditis elegans Hypothetical
           protein T15B7.1 protein.
          Length = 307

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 370 SGIYTCLINWKMCLIFCNMQTF 305
           SG YT L+N K   ++C+MQT+
Sbjct: 92  SGTYTILVNGKETEVWCDMQTY 113


>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 158 protein.
          Length = 1003

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 26  RSPGRVNWYWVFLLYIIPEFGICALYGDRLAPCHIWDGTKL 148
           R  G ++ YW     I+ + G+C L G  L    +W G KL
Sbjct: 755 RMSGMIDVYW-----IVHDGGLCLLMGYLLKQHKVWRGCKL 790


>Z54216-4|CAA90947.1|  421|Caenorhabditis elegans Hypothetical
           protein T24H10.5 protein.
          Length = 421

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 13  EVSGSIPGPGQLVLGFSTLYHPGVWNLCPIW 105
           E  GS+ GP QL+    T   P V N C  W
Sbjct: 316 EEEGSVSGPEQLITDLKTT-KPMVENNCKFW 345


>AL132860-1|CAB60513.2|  616|Caenorhabditis elegans Hypothetical
           protein Y56A3A.2 protein.
          Length = 616

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 241 CDKYNMT*AHACYPR 197
           CD++N+T AH C+ R
Sbjct: 387 CDEFNVTTAHVCFQR 401


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,773,450
Number of Sequences: 27780
Number of extensions: 199027
Number of successful extensions: 444
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)