Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_G04
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce...   136   2e-33
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    27   1.6  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    26   2.9  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   5.0  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.0  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   6.7  

>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 83

 Score =  136 bits (328), Expect = 2e-33
 Identities = 59/82 (71%), Positives = 69/82 (84%)
 Frame = +2

Query: 53  MPLAIDL*HPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 232
           M LA+DL +PS  SE RKHKLK+LV  P S+FMDVKCPGC+ ITTVFSHAQ VV+C  C+
Sbjct: 1   MVLAVDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCA 60

Query: 233 TILCQPTGGRARLTEGCSFRRK 298
           ++LCQPTGG+ARL EGCSFRRK
Sbjct: 61  SVLCQPTGGKARLMEGCSFRRK 82


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 139 VWMWYQSLQLMFPPLRR 89
           VWMW+  L L+FP  ++
Sbjct: 459 VWMWFMILMLLFPQYQK 475


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 136 WMWYQSLQLMFPPLRRGGRV 77
           W+W+ +L L+FP  +   +V
Sbjct: 459 WLWFMALMLLFPSYQNPNKV 478


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 291 LNEHPSVNLARPPVGWQRI 235
           LNEH ++ LARP +   RI
Sbjct: 425 LNEHETIELARPVLAQNRI 443


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 211 NPLCVAKYRSYFVATGTF 158
           +P  + KY+ YFV T TF
Sbjct: 23  HPCSILKYKVYFVTTDTF 40


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 220 AYNNPLCV-AKYRSYFVATGTFDIHEIRVWMWYQSL 116
           ++ NP  + AK+RS+     T D  ++R W+ + S+
Sbjct: 2   SFQNPSYINAKHRSFLQPKDTQDSQDLRNWVSHSSV 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,926,944
Number of Sequences: 5004
Number of extensions: 38138
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)