Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_G04
         (435 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719...   130   6e-31
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    56   2e-08
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590     54   7e-08
01_01_0911 - 7176355-7176372,7176502-7176756,7177352-7177615,717...    30   0.71 
11_05_0076 - 18861629-18861862,18862421-18862532,18863001-18863146     27   5.0  
03_02_0238 - 6687334-6687421,6687456-6687512,6688266-6688351,668...    27   6.6  
08_01_0392 - 3454224-3454325,3454926-3455035,3455496-3455609,345...    27   8.7  
04_03_0126 + 11524567-11524967,11525113-11525647,11525669-11526043     27   8.7  

>04_03_0487 +
           16471538-16471540,16471694-16471795,16471880-16471908,
           16472619-16472745
          Length = 86

 Score =  130 bits (313), Expect = 6e-31
 Identities = 57/78 (73%), Positives = 64/78 (82%)
 Frame = +2

Query: 65  IDL*HPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 244
           IDL +P    E+ KHK KRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC GC T+LC
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLC 66

Query: 245 QPTGGRARLTEGCSFRRK 298
           QPTGG+ARLTEGCSFRRK
Sbjct: 67  QPTGGKARLTEGCSFRRK 84


>02_03_0220 +
           16545571-16545573,16545717-16545818,16545980-16546008,
           16549421-16553036
          Length = 1249

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 25/46 (54%), Positives = 31/46 (67%)
 Frame = +2

Query: 65  IDL*HPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHA 202
           IDL +P    E+ KHK KRLV  PNS+FMDVKC GC+ ++  F  A
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52


>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
          Length = 45

 Score = 53.6 bits (123), Expect = 7e-08
 Identities = 23/39 (58%), Positives = 28/39 (71%)
 Frame = +2

Query: 65  IDL*HPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKI 181
           IDL +P    E+ KHK KRLV  PNS+FMDVKC GC+ +
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFSM 45


>01_01_0911 -
           7176355-7176372,7176502-7176756,7177352-7177615,
           7177691-7177810,7177910-7178041,7178136-7178252,
           7178335-7178459,7178611-7178920,7179368-7179550,
           7179643-7179787,7180126-7181355,7181454-7181563,
           7181768-7182037,7182130-7182963
          Length = 1370

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +3

Query: 201 HRGLLYAQDVPQSFASPLVAELD*RKDVHLEENSIKSWRESRINLKIMCVSNS 359
           H  L+Y Q       SP+VA L  + D+ +E   I  +RE  ++  I C+ NS
Sbjct: 836 HTLLVYLQSTTPE-QSPVVAGLLLQLDLLVEPRKISMYREEAVDSLIQCLKNS 887


>11_05_0076 - 18861629-18861862,18862421-18862532,18863001-18863146
          Length = 163

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = -3

Query: 136 WMWYQSLQLMFPPLRRGGRVL*VNCERHGYSFDAE 32
           W W   LQL  P L   G     NC R   SFD +
Sbjct: 94  WWWMMLLQLQQPLLTTSGLDAATNCARAVPSFDRD 128


>03_02_0238 -
           6687334-6687421,6687456-6687512,6688266-6688351,
           6688410-6688589
          Length = 136

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 170 CYKITTVFSHAQRVVVCAGCSTILCQPTGGR 262
           CYKI+ ++SH Q ++    C  IL +PTG R
Sbjct: 96  CYKISKIYSHGQSLL----CLDIL-RPTGRR 121


>08_01_0392 -
           3454224-3454325,3454926-3455035,3455496-3455609,
           3455930-3456043,3456474-3456531
          Length = 165

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +2

Query: 134 PNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGG 259
           PN     + C GC  +  ++      V CA CST+   P  G
Sbjct: 18  PNGAQSQLVCSGCRNLL-MYPAGATSVCCAVCSTVTAVPAPG 58



 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 200 AQRVVVCAGCSTILCQPTGGRARLTEGCS 286
           AQ  +VC+GC  +L  P G  +     CS
Sbjct: 21  AQSQLVCSGCRNLLMYPAGATSVCCAVCS 49


>04_03_0126 + 11524567-11524967,11525113-11525647,11525669-11526043
          Length = 436

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 282 HPSVNLARPPVGWQRIVEHPAHTTTLCAWLNT 187
           HPS        GW  ++E  AH   +  WL T
Sbjct: 318 HPSTAAFLSHCGWSSVLESMAHGVPVIGWLLT 349


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,027,483
Number of Sequences: 37544
Number of extensions: 268254
Number of successful extensions: 677
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)