Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_G04
         (435 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal pro...   146   8e-36
U23517-8|AAM98041.1|  605|Caenorhabditis elegans A kinase anchor...    31   0.48 
U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor...    31   0.48 
U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte grow...    28   3.4  
Z83237-2|CAB05789.1|  258|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AC024200-2|AAF35997.2|  189|Caenorhabditis elegans Hypothetical ...    27   4.4  
U42833-4|AAA83579.1|  319|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical ...    27   7.8  

>AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 27 protein.
          Length = 83

 Score =  146 bits (353), Expect = 8e-36
 Identities = 63/83 (75%), Positives = 71/83 (85%)
 Frame = +2

Query: 53  MPLAIDL*HPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 232
           MPLA+DL HP P  E R HKLKRLV HPNSYFMDVKC GC+KI+TVFSHA  VVVC GC+
Sbjct: 1   MPLAVDLLHPEPQREIRCHKLKRLVQHPNSYFMDVKCSGCFKISTVFSHATTVVVCVGCN 60

Query: 233 TILCQPTGGRARLTEGCSFRRKQ 301
           T+LCQPT G+A+LTEGCSFR+KQ
Sbjct: 61  TVLCQPTRGKAKLTEGCSFRKKQ 83


>U23517-8|AAM98041.1|  605|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform c protein.
          Length = 605

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 83  SPASERRKHKLKRLVPHPNSYFM-DVKCPGCYKITTVFSHAQRVVVCAGCSTILC 244
           +P  ERR  + +  +   + Y++ D +CP C    T F+   R   C  C  +LC
Sbjct: 517 TPRRERRLTESELQLGKTSPYWIPDSECPNCMLCNTRFTIITRRHHCRACGRVLC 571


>U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform b protein.
          Length = 1284

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 83  SPASERRKHKLKRLVPHPNSYFM-DVKCPGCYKITTVFSHAQRVVVCAGCSTILC 244
           +P  ERR  + +  +   + Y++ D +CP C    T F+   R   C  C  +LC
Sbjct: 517 TPRRERRLTESELQLGKTSPYWIPDSECPNCMLCNTRFTIITRRHHCRACGRVLC 571


>U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte growth
           factor-regulatedtk substrate (hrs) family protein 1
           protein.
          Length = 729

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 164 PGCYKITTVFSHAQRVVVCAGCSTILCQPTGGR 262
           P CY+  +VFS   R   C  C  I C     R
Sbjct: 161 PECYRCRSVFSVFTRKHHCRACGQIFCDKCSSR 193


>Z83237-2|CAB05789.1|  258|Caenorhabditis elegans Hypothetical
           protein R06B9.2 protein.
          Length = 258

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 63  QLTYSTLPPRRRGGNIS*RDWYHIQTLISWMSNV 164
           QL  S LPP   G N + R W   +   SW  N+
Sbjct: 109 QLPCSVLPPSFEGNNGNIRYWVRAEVSRSWKFNI 142


>AC024200-2|AAF35997.2|  189|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.10 protein.
          Length = 189

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 107 HKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVC 220
           H  +R VP    + MD+KCP C+K+         +V+C
Sbjct: 91  HHSRRSVP---VFMMDMKCPVCHKVVPSDDADIHLVMC 125


>U42833-4|AAA83579.1|  319|Caenorhabditis elegans Hypothetical
           protein ZK430.2 protein.
          Length = 319

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 88  GGRVL*VNCERHGYSFDAEPEKERRSQY 5
           GG +  ++   HG  +D + E +RR+QY
Sbjct: 32  GGDLKIIDKSEHGSGYDPQTEADRRAQY 59


>AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical
           protein F19B2.6 protein.
          Length = 807

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 205 EGCCMRRMFHNPLPAHWWP 261
           +GCC++  +H P P+ + P
Sbjct: 402 KGCCVKDQYHEPAPSGYHP 420


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,778,367
Number of Sequences: 27780
Number of extensions: 217432
Number of successful extensions: 473
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)