Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_G04
         (435 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   4.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   6.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   6.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.9  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 258 PPVGWQRIVEHPAHTTT 208
           P VGW+    HPA+  T
Sbjct: 200 PLVGWKDKRSHPAYNMT 216


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 207 LCAWLNTVVIL*QPGHLTSMK*EFGCGTN 121
           L  +LNT ++L  P  +T +   FG G +
Sbjct: 562 LVCYLNTFLLLATPTTVTCILQRFGVGVS 590


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 207 LCAWLNTVVIL*QPGHLTSMK*EFGCGTN 121
           L  +LNT ++L  P  +T +   FG G +
Sbjct: 652 LVCYLNTFLLLATPTTVTCILQRFGVGVS 680


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 37  HQSCNHAARN*LIAPF 84
           HQS N  AR+ L  PF
Sbjct: 249 HQSINKEARSNLYLPF 264


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 37  HQSCNHAARN*LIAPF 84
           HQS N  AR+ L  PF
Sbjct: 244 HQSINKEARSNLYLPF 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,834
Number of Sequences: 438
Number of extensions: 2700
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)