Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_G01
         (384 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0376 - 20754386-20755392,20755683-20756320,20756433-207566...    27   3.8  
06_01_0144 + 1089090-1091390                                           27   5.1  
12_02_0795 + 23217463-23217684,23218296-23219155,23220001-232209...    27   6.7  
06_01_0619 - 4501296-4501561,4501664-4501784,4501915-4502253,450...    27   6.7  
06_01_0137 - 1045301-1047601                                           27   6.7  
06_01_0124 - 958935-959967,959985-961222                               27   6.7  
10_08_0570 + 18851451-18851723,18851894-18851928,18851929-188519...    26   8.9  

>05_04_0376 -
           20754386-20755392,20755683-20756320,20756433-20756627,
           20757730-20757795,20757942-20758007,20758402-20758445
          Length = 671

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +3

Query: 147 YQLAIDYQTSTISFSLSPEVNGKTVLKSAYFNTKTNEYGEIAGITNGMANAVDSIDH 317
           Y  ++D Q   +  +L    +G   LK    N  + EYG  A +  G A ++  ++H
Sbjct: 141 YVSSVDVQWEDVYKALENLNDGSQKLKVGLLNFNSTEYGSWAQLLPGSAVSIVRLEH 197


>06_01_0144 + 1089090-1091390
          Length = 766

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 356 VRVNSILASEINFVVDTVHSVSHAICDSGDFSI--FICFCIEVSG 228
           V +  +L  E+NF+ +  HSV   +  S  F +  ++CF + V G
Sbjct: 335 VALFQVLNDEVNFLAEYYHSVLPVVLASPYFFVVNYLCFPVVVFG 379


>12_02_0795 +
           23217463-23217684,23218296-23219155,23220001-23220929,
           23221184-23221968
          Length = 931

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +3

Query: 30  IFVWLFVFAEGGDKKKCDVI-VIRNNNYEKQVLKSDVHNPYQLAIDYQTSTISFSLSPEV 206
           + + L    EG   +K  VI ++      K  L ++V    +     + + +S S  P+V
Sbjct: 264 VVIKLLTEGEGASSQKLKVISIVGPGGLGKTTLANEVFRKLESQFQCR-AFVSLSQQPDV 322

Query: 207 NGKTVLKSAYFNTKTNEYGEI 269
             K ++++ Y      EYG I
Sbjct: 323 --KKIVRNIYCQVSQQEYGNI 341


>06_01_0619 -
           4501296-4501561,4501664-4501784,4501915-4502253,
           4502290-4502327,4502673-4502757,4502840-4503093,
           4503868-4503961
          Length = 398

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
 Frame = +1

Query: 160 STTRPAQYLSVYLPK*TVKLF*NPLTSIQKQMNMEKSPESQMAWLTLWTVSTT-KFISEA 336
           S + P Q+L +  PK  + L    L  + + M+M+   + + AW+ LW + T+ KF  ++
Sbjct: 309 SPSSPCQFLPI-TPKLEI-LMCKVLMWVVETMHMKNLIKHRTAWVALWLIYTSMKFRIDS 366

Query: 337 KMEFTRTITL-----PRKLQN 384
             +   ++       PR +QN
Sbjct: 367 SQDIHGSVERADGEEPRPIQN 387


>06_01_0137 - 1045301-1047601
          Length = 766

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 171 TSTISFSLSPEVNGKTVLKSAYFNTKTNEYGEIAGITNG 287
           T+ +  +++ E+  +  LK  YF+T    YG++  I  G
Sbjct: 634 TARVYGTMTTELKRELGLKGYYFSTDATRYGKMMAIAGG 672


>06_01_0124 - 958935-959967,959985-961222
          Length = 756

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 171 TSTISFSLSPEVNGKTVLKSAYFNTKTNEYGEIAGITNG 287
           T+ +  +++ E+  +  LK  YF+T    YG++  I  G
Sbjct: 624 TARVYGAMTTELKRELGLKGYYFSTDATRYGKMMAIAGG 662


>10_08_0570 +
           18851451-18851723,18851894-18851928,18851929-18851998,
           18852089-18852187,18852276-18852365,18852430-18852920,
           18853015-18853102,18853204-18853245,18853548-18853574,
           18853817-18853996,18854249-18854416,18854501-18854710
          Length = 590

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +3

Query: 111 EKQVLKSDVHNPYQLAIDYQTSTISFSLSPE-VNGKTVLKSAYFNTKTNEYGEIAG 275
           EK  L ++ H P    +  Q     FS+SP+ +N + +    Y N        I+G
Sbjct: 434 EKGNLSNECHFPLSKQLHEQLKAYGFSISPQLINREFITSFGYLNYLERTSKNISG 489


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,900,702
Number of Sequences: 37544
Number of extensions: 182297
Number of successful extensions: 447
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)