Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_G01
         (384 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   1.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   4.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   4.9  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
          protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 18 MKYLIFVWLFVFAEGG 65
          +KYL+F++ FVFA  G
Sbjct: 8  IKYLLFIFNFVFAVCG 23


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 16/81 (19%), Positives = 39/81 (48%)
 Frame = +2

Query: 98   EQQL*KTSSQERRAQSLPISNRLPDQHNIFQFISRSER*NCSKIRLLQYKNK*IWRNRRN 277
            +QQ  +   Q+++ Q L   N  PD HN++  +   ++  C    ++ + ++   + +  
Sbjct: 1451 QQQQQQQQQQQQQQQQL---NHYPDLHNLYA-VPTDKKSACDSKLIVDHSSQKTQQQQPQ 1506

Query: 278  HKWHG*RCGQYRPQSLSRRPR 340
             +    +  Q +PQ  S++P+
Sbjct: 1507 QQQQ--QQQQQQPQQQSQQPQ 1525


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 365 SVIVRVNSILASEINFVVDTVHSVSHAICDSGDFSI 258
           S++  V     ++ NFV D V  + + +   GD  I
Sbjct: 449 SLVASVPFFANADSNFVSDVVTKLRYEVFQPGDIII 484


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 365 SVIVRVNSILASEINFVVDTVHSVSHAICDSGDFSI 258
           S++  V     ++ NFV D V  + + +   GD  I
Sbjct: 417 SLVASVPFFANADSNFVSDVVTKLRYEVFQPGDIII 452


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,986
Number of Sequences: 438
Number of extensions: 2293
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)