Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_F24
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    29   0.16 
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   0.83 
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    25   2.5  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    24   5.9  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    24   7.8  

>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 29.5 bits (63), Expect = 0.16
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 200 GNLSTGRSITLLSAKMKDPWYS*DRKRLTRA 292
           G+L  G    LL  +   PWY  D  R+TRA
Sbjct: 458 GDLHNGHYYALLKTEKDGPWYKYDDTRVTRA 488


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.1 bits (57), Expect = 0.83
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +1

Query: 19  SKSIAVLSACIIVGSALPVDKYPVLKDQPAE 111
           SKSIA L  CI +G + P  K PV+K Q  E
Sbjct: 57  SKSIAKLDLCIELGRSYPYVK-PVIKLQNGE 86


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
 Frame = +3

Query: 6   VNNGV*EHSSIKRLH-NCGLS---ASRG*IPGAERPTGRGPLQGEQPNGPRMSHRRKRSG 173
           V+ GV E S++  +H N  L    AS    P A+      PL    P   R S   KR+G
Sbjct: 22  VDEGVVERSALDWVHANIHLQDGPASPVTAPAAQPVESSVPL----PLPKRKSSVEKRAG 77

Query: 174 SQVLLAKGWEIFQLAGA*RCSPQR*RIPGIP 266
           S         + Q +G  R   +  ++PG+P
Sbjct: 78  SVASAVAAMSLSQNSGEKRTPEEPRKLPGVP 108


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 84  PGAERPTGRGPLQGEQPNG 140
           PG  RP GRG   G+ P G
Sbjct: 98  PGVARPAGRGIPLGQAPVG 116


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 234 SSVMLLPVERFP--ILLPGVLDSLIVSFDETFEDRWVVLLEEDL 109
           SS+ +L   R P  +    V+ S+++S +  F   W++   ED+
Sbjct: 570 SSISVLKSMRIPSSVSYEAVIISMVLSKNPCFSSEWLIKCFEDM 613


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,544,370
Number of Sequences: 5004
Number of extensions: 31368
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)