Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_F24
(348 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0915 + 28755584-28756139,28756695-28756846,28756994-287569... 32 0.14
06_03_0339 - 19687749-19690805 30 0.43
09_06_0216 + 21627238-21627834 28 1.8
08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195 28 2.3
06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835 28 2.3
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 28 2.3
09_06_0111 - 20924838-20924969,20925147-20925290,20925391-209254... 27 4.0
11_06_0501 + 24368028-24368222 27 5.3
06_01_0588 - 4224348-4224516,4224674-4224767,4224872-4225490,422... 27 5.3
04_01_0615 - 8060085-8060972 27 5.3
02_05_1059 + 33815979-33816235,33816467-33816732,33817149-338171... 27 5.3
09_02_0419 + 9046090-9046333,9046451-9046634,9046733-9046947,904... 26 7.1
04_01_0502 - 6587068-6587964 26 7.1
04_01_0034 - 401208-402923 26 9.3
>03_05_0915 +
28755584-28756139,28756695-28756846,28756994-28756996,
28757587-28757690,28758033-28758121,28758682-28758825,
28759194-28759291,28759380-28759502,28760045-28760113,
28760206-28760406
Length = 512
Score = 31.9 bits (69), Expect = 0.14
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 262 FLRPQASDKGHYHCFVETPAGLASSRVIS 348
FLRP A+D Y CFV G+AS ++I+
Sbjct: 274 FLRPNAADLSDYGCFVVLALGVASLQMIA 302
>06_03_0339 - 19687749-19690805
Length = 1018
Score = 30.3 bits (65), Expect = 0.43
Identities = 24/86 (27%), Positives = 38/86 (44%)
Frame = -2
Query: 326 KPAGVSTKQW*WPLSDACGLRNTRDPSSLRRAALCSCQLKDFPSFCQEYLTP*SFPSMRH 147
KP+ S Q W + CG+R S L++A C LK F + L + PS +
Sbjct: 172 KPSNPSDSQTFWTICPTCGMRYQYYLSILKKALRCQNCLKPFVAL---DLNEQAVPSGAN 228
Query: 146 SRTVGLFSLKRTSAGWSFSTGYLSTG 69
R+ G++ K + A +F + G
Sbjct: 229 QRSAGVW--KSSGAPQNFPGSQANVG 252
>09_06_0216 + 21627238-21627834
Length = 198
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 150 SHRRKRSGSQVLLAKGWEIFQLAG 221
SH RKR+ +Q +LAK ++F AG
Sbjct: 108 SHYRKRAAAQDVLAKAQDVFNQAG 131
>08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195
Length = 837
Score = 27.9 bits (59), Expect = 2.3
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -2
Query: 224 CSCQLKDFPSFCQEYLTP*SFPSMRHSRTVGLF 126
C+C++ F ++C + + P + + HS LF
Sbjct: 390 CACEIAMFDTYCSKQMLPMRYGKIDHSSNTTLF 422
>06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835
Length = 1091
Score = 27.9 bits (59), Expect = 2.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 251 PSSLRRAALCSCQLKDFPSFCQ 186
P SLRR ++ +C+ DFP++ Q
Sbjct: 911 PPSLRRLSIVNCRKLDFPAYLQ 932
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 27.9 bits (59), Expect = 2.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 37 LSACIIVGSALPVDKYPVLKD 99
L AC + G+ LP+D++ KD
Sbjct: 605 LGACALAGTGLPIDRFKTAKD 625
>09_06_0111 -
20924838-20924969,20925147-20925290,20925391-20925453,
20925993-20926116,20926779-20927005,20927088-20927255,
20927348-20927498,20927567-20927889
Length = 443
Score = 27.1 bits (57), Expect = 4.0
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +1
Query: 151 LIEGNDQGVKYSWQKDGKSFNWQEHN--AALRKDEGSLVF-LRPQASDKGHYHCFVETPA 321
L G + VKY +D F WQE N A L ++ +L + ++ +K E +
Sbjct: 258 LASGIAEVVKYGLIRDAPFFEWQEKNMPALLAREPSALAYAIKRSCENKAEVVAQDEKES 317
Query: 322 GLASS 336
GL ++
Sbjct: 318 GLRAT 322
>11_06_0501 + 24368028-24368222
Length = 64
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +1
Query: 139 VLECLIEGNDQGVKYSWQKDGKSFNWQEHNAALRKDE 249
++E +I+G+D S+++D SF +++ N + KD+
Sbjct: 1 MVEFVIDGDDLEFTLSYEEDELSFLFEKSNELMLKDQ 37
>06_01_0588 -
4224348-4224516,4224674-4224767,4224872-4225490,
4225609-4225734,4225819-4226487,4226728-4226853,
4226940-4227266,4227366-4227439,4228469-4228583,
4228871-4229164
Length = 870
Score = 26.6 bits (56), Expect = 5.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 280 SDKGHYHCFVETPAGL 327
+ GHY+CFV T +G+
Sbjct: 289 TQSGHYYCFVRTSSGM 304
>04_01_0615 - 8060085-8060972
Length = 295
Score = 26.6 bits (56), Expect = 5.3
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 10 TMASKSIAVLSACIIVGSALPVDKYPVLKDQPAEVLFKENNPTVL 144
+ ASK+ AVL VG ALP P QP E + ++ ++L
Sbjct: 119 SFASKAAAVLPCLTTVGPALP--GAPSTPSQPRETILSRHDRSLL 161
>02_05_1059 +
33815979-33816235,33816467-33816732,33817149-33817192,
33817363-33817539,33817638-33817964,33818067-33818192,
33818518-33818622,33818815-33820125,33820221-33820382,
33820416-33820517,33820549-33821272,33821358-33821451,
33821824-33821986
Length = 1285
Score = 26.6 bits (56), Expect = 5.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 280 SDKGHYHCFVETPAGL 327
+ GHY+CFV T +G+
Sbjct: 376 TQSGHYYCFVRTSSGI 391
>09_02_0419 +
9046090-9046333,9046451-9046634,9046733-9046947,
9047261-9047384,9047462-9047633
Length = 312
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 187 WQKDGKSFNWQEHNAALRKDEGSLVF 264
W K+G ++NW H++ D GS+ F
Sbjct: 258 WTKEGVTYNW--HSSVKDIDTGSMAF 281
>04_01_0502 - 6587068-6587964
Length = 298
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 106 AEVLFKENNPTVLECLIEGNDQGVKYS 186
+EV P VL C +EGND ++YS
Sbjct: 136 SEVTRINTAPRVLPCHLEGNDVVIQYS 162
>04_01_0034 - 401208-402923
Length = 571
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 30 SSIKRLHNCGL-SASRG*IPGAERPTGRGPLQGEQPNGPRM 149
S + H+CG +A A P R PL +QP+ PR+
Sbjct: 259 SPVHHHHHCGKENAPPAAKQAAAAPPMRAPLAEQQPHAPRL 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,663,088
Number of Sequences: 37544
Number of extensions: 232684
Number of successful extensions: 715
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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