Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_F24
         (348 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              30   0.007
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    30   0.009
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.34 
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   3.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   4.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   7.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   7.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        20   9.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 30.3 bits (65), Expect = 0.007
 Identities = 22/70 (31%), Positives = 28/70 (40%)
 Frame = +1

Query: 100 QPAEVLFKENNPTVLECLIEGNDQGVKYSWQKDGKSFNWQEHNAALRKDEGSLVFLRPQA 279
           +P+        P    C + GN      SW KDGK    +E  A LR +         + 
Sbjct: 313 EPSTQTIDFGRPATFTCNVRGNPIKT-VSWLKDGKPLGLEE--AVLRIES-------VKK 362

Query: 280 SDKGHYHCFV 309
            DKG Y CFV
Sbjct: 363 EDKGMYQCFV 372



 Score = 28.3 bits (60), Expect = 0.027
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
 Frame = +1

Query: 91  LKDQPAEVLFKENNPTVLECLIEGNDQGVKYSWQKDGKSFNWQEHNAALRK--DEGSLVF 264
           +K+ P  V F      V+EC   GN Q      + DG +         LR+    G+LVF
Sbjct: 6   VKEPPNRVDFSNGTGAVVECQARGNPQPDIIWVRADGSAVG---DVPGLRQVLPNGNLVF 62

Query: 265 LRPQASD---KGH---YHCFVETPAGLASSRVIS 348
              +A D   + H   Y C   +PAG   SR ++
Sbjct: 63  PPFRAEDYRQEVHAQVYSCLARSPAGSVHSRDVN 96



 Score = 26.2 bits (55), Expect = 0.11
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 247  EGSLVFLRPQASDKGHYHCFVETPAG 324
            EGSL       +D G Y C+VE   G
Sbjct: 1328 EGSLFIKEVDRTDAGEYSCYVENTFG 1353



 Score = 25.4 bits (53), Expect = 0.19
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 226 NAALRKDEGSLVFLRPQASDKGHYHCFVETPAG 324
           N  +R+  G+L+    +  D G Y C V    G
Sbjct: 262 NERVRQVSGTLIIREARVEDSGKYLCIVNNSVG 294


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 29.9 bits (64), Expect = 0.009
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
 Frame = +1

Query: 136 TVLECLIEGNDQGVKYSWQKDGKSFNWQEHNAALRKDE-GSLVFLRPQASD-KGHYHCFV 309
           T L C +   D  +  SW KDG++    E       D+  S++ +   + D  G+Y C  
Sbjct: 628 TTLTCSVTRGDLPLSISWLKDGRAMGPSERVHVTNMDQYNSILMIEHLSPDHNGNYSCVA 687

Query: 310 ETPAGLAS 333
              A   S
Sbjct: 688 RNLAAEVS 695



 Score = 23.8 bits (49), Expect = 0.59
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
 Frame = +1

Query: 85  PVLKDQPAEVLFKENNPTVLECLIEGNDQGVKYSWQKDGKSFNWQEHNAALRKDEGSLVF 264
           PV+ +    V   ++  T L C+ +      +Y W     S      +    +  GS++ 
Sbjct: 238 PVILENSGVVHVAQDESTSLVCVAQACPTP-EYRWYAQTGSEPMLVLSGPRTRLLGSVLA 296

Query: 265 LRPQA-SDKGHYHCFVETPAGLASSRV 342
           L      D G Y C    P G AS+ +
Sbjct: 297 LEAVTLEDNGIYRCSASNPGGEASAEI 323


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.34
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
 Frame = +1

Query: 85  PVLKDQPAEVLFKENNPTVLECLIEGNDQGVKYSWQKDGKS-F----NWQEHNAALRKDE 249
           P+++    +    E   T   C +   D  +  SW KDG+S F    N    N +     
Sbjct: 611 PIIEPFTFQEGLSEGMRTRTVCGVAAGDPPLTISWLKDGQSPFPLPPNLASANISQLDPY 670

Query: 250 GSLVFLRPQASD-KGHYHCFVETPA 321
            SL+ +   A++  G Y C    PA
Sbjct: 671 SSLLSITNLAAEHSGDYTCVAANPA 695



 Score = 23.8 bits (49), Expect = 0.59
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
 Frame = +1

Query: 85  PVLKDQPAEVLFKENNPTVLECLIEGNDQGVKYSWQKDGKSFNWQEHNAALRKDEGSLVF 264
           PV+ +    V   ++  T L C+ +      +Y W     S      +    +  GS++ 
Sbjct: 238 PVILENSGVVHVAQDESTSLVCVAQACPTP-EYRWYAQTGSEPMLVLSGPRTRLLGSVLA 296

Query: 265 LRPQA-SDKGHYHCFVETPAGLASSRV 342
           L      D G Y C    P G AS+ +
Sbjct: 297 LEAVTLEDNGIYRCSASNPGGEASAEI 323


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +1

Query: 49  IIVGSALPVDKYPVLKDQPAEVLFKENNPT 138
           +++G+   +DK+       A  + K+N PT
Sbjct: 203 VLIGAPNEIDKFYGTPGYTAPEVIKQNRPT 232


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 127 SP*RGPRPVGLSAPGIYPREALSPQ 53
           SP   P   G S P +YP    SPQ
Sbjct: 380 SPYGYPIGSGGSFPSLYPMATTSPQ 404


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +3

Query: 114  PLQGEQPNGPRMSHRRKRSGSQVLLAKGWEIFQLAGA*RCSPQR*RIPG 260
            P++ +     + S ++++  + V    G  I Q A   + SPQ+  +PG
Sbjct: 969  PVKVQSQQQSQQSQQQQQQQTIVTNQAGKSILQTANIKQQSPQQHVLPG 1017


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -2

Query: 284 SDACGLRNTRDPSSLRRAALC 222
           SD C  R  + P+  ++  LC
Sbjct: 167 SDGCDARKKKGPTPRQQEELC 187


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 289 GHYHCFVETPAGLASS 336
           GH+H    TP+ L SS
Sbjct: 172 GHHHQNGATPSSLVSS 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,375
Number of Sequences: 438
Number of extensions: 2143
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)