Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_F23
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   3.0  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    25   3.9  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    23   9.0  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    23   9.0  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 172 FVTLKI*FPLFLDNLIRFL*VYSNEKLIIHHPPFS 68
           F+TLK    LF D+L R L    N K+  +  PFS
Sbjct: 156 FLTLKWNSSLFDDDLARLLFFMINSKITNYDLPFS 190


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 264 SNARALQASHCTHTPAHHTQVLNFFKEPFFHL 169
           S ARALQ     +TP   +Q   FF E  F+L
Sbjct: 87  SFARALQDPQTPNTPPVSSQHRRFFSEGSFNL 118


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = +3

Query: 42  YLIAISTPSLNGGW*IINFSFEYTYKNLIKLSKNNGNHIFKVTNGKKAP 188
           YL+ IS+  +   W ++N +  +T  +L  +     N++    N    P
Sbjct: 686 YLLCISSSGMVYAWNVVNKTALFTANSLAPILSRVSNNVTIENNSTDIP 734


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 296 PARYSDTLWSRVMLERYRHH 237
           P  Y   +W+ +M+  YR H
Sbjct: 721 PKIYVGQIWNSIMISMYREH 740


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,311,008
Number of Sequences: 5004
Number of extensions: 22694
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)