Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_F23
         (330 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   1.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   5.1  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    20   6.7  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    20   8.9  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = +2

Query: 221 GVCVQCDAC-NALALL*TIKCH 283
           GVC  CD C   L+   T+K H
Sbjct: 369 GVCYTCDVCGKTLSTKLTLKRH 390


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 290 RYSDTLWSRVMLERYRHHTAHTLLHI 213
           R  D LWS V    ++  TAH L  +
Sbjct: 95  RGKDALWSLVPHMAWQLSTAHLLAQL 120


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 93  NFSFEYTYKNLIKLSKNNGN 152
           N +++Y Y N    + NN N
Sbjct: 93  NNNYKYNYNNKYNYNNNNYN 112


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 108 YTYKNLIKLSKNNGNHIFKVTN 173
           Y YKN++ LS++  +    V N
Sbjct: 27  YGYKNIMTLSQDTSHFASLVRN 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,732
Number of Sequences: 438
Number of extensions: 1579
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)